PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10014302
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ZF-HD
Protein Properties Length: 295aa    MW: 33178.2 Da    PI: 10.09
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10014302genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer85.36.6e-27103154458
  ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                  vrY+eC+kNhA s G h+vDGCgEfmp +++      l+CaAC+CHRnFHR+e +
  Lus10014302 103 VRYRECMKNHAPSSGRHVVDGCGEFMPRSDD---GVDLRCAACDCHRNFHRHEID 154
                  89*************************9554...478**************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.4E-24103153IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-16103154IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.2E-24104153IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.324105152IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.35E-17219287IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.1E-28220287IPR009057Homeodomain-like
TIGRFAMsTIGR015655.0E-27226283IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MSSILDQVQS GLPIQSTMDQ EGDTNKTTSL LGHTTAHQRQ HSSSGARSRT DRNRSIDLPP  60
DDHRSPLDLQ PNDPHEEDDR RSRLLQPAAY PSTVQQQQPL IIVRYRECMK NHAPSSGRHV  120
VDGCGEFMPR SDDGVDLRCA ACDCHRNFHR HEIDSPPPTM LQPAPRRTTA STMHRFPPPP  180
PPPVIMMNFG GGSSMGAESS SKDLEKSRGT RGYGLLLQRS TSSHSRKRHR TKFSKEQKQS  240
MSDFAERIGW RIDKGDESEV DMFCSRIGVK RKVFKVWMHN NKQRSGKGNQ SKCK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A1e-172262821773ZF-HD homeobox family protein
1wh7_A1e-172252821673ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00268DAPTransfer from AT2G18350Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10014302
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024978564.15e-59zinc-finger homeodomain protein 6-like
SwissprotQ9ZPW71e-52ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBLA0A103XKG91e-57A0A103XKG9_CYNCS; Homeodomain-containing protein
STRINGLus100143020.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.18e-43homeobox protein 24