PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10014300

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

bHLH

Protein Properties

Length: 317aa MW: 35396.1 Da PI: 8.2219

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10014300	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.9	8.6e-09	135	182	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i ++ L++l+P + +k a +L + ++Y++sLq Lus10014300 135 SHSLAERARREKISRKMKYLQDLVPGC----NKITGRAGMLDEIINYVQSLQ 182 8************************....899***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.36E-15	129	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.95E-8	129	186	No hit	No description
PROSITE profile	PS50888	14.532	131	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.4E-16	131	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-6	135	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.0E-7	137	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MPSQEHTSCM EDMSVLERQS ARFKWLLQQQ QSKDTSFIMP PQFHHLLLSS GFEFLSPDQI 60 ASHPDHCLST SSNKRKTEVG RGEYRVKKRV KGEREMAECS SGTRSTETEK ICKDSGAEKS 120 EYIHVRARRG QATDSHSLAE RARREKISRK MKYLQDLVPG CNKITGRAGM LDEIINYVQS 180 LQRQVEFLSM KLAAVSPGME FGSDKLPGKE KLTWNDFLCK TPSKFQAYGS FPTAISSVFP 240 GAAAASLAQL HHLAASRELE ILNKHHSQLP SSPEETPTSS TFIPELCVES SCYPREQQKL 300 SGTESISDAI YPTFVA*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of brassinosteroid signaling. {ECO:0000269\|PubMed:12454087}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10014300

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flagellin, jasmonic acid (JA), brassinosteroid and cytokinin, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269\|PubMed:12454087, ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007046905.2	3e-58	PREDICTED: transcription factor HBI1 isoform X1
Refseq	XP_022752141.1	3e-58	transcription factor HBI1-like
Swissprot	Q93VJ4	3e-50	BEE2_ARATH; Transcription factor BEE 2
TrEMBL	A0A061DG51	8e-57	A0A061DG51_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1
STRING	Lus10014300	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17818	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36540.1	5e-52	BR enhanced expression 2

Link Out ? help Back to Top
Phytozome	Lus10014300

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Singh M,Gupta A,Singh D,Khurana JP,Laxmi A Arabidopsis RSS1 Mediates Cross-Talk Between Glucose and Light Signaling During Hypocotyl Elongation Growth. Sci Rep, 2017. 7(1): p. 16101 [PMID:29170398]