PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10014015

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

MYB_related

Protein Properties

Length: 451aa MW: 49880.1 Da PI: 7.4283

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10014015	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.8	5.7e-14	136	180	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a +++ + Wk+I +g +t q++s+ qky Lus10014015 136 RESWTEEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 180 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.57E-17	130	186	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.094	131	185	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.9E-7	134	186	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.3E-18	134	183	IPR006447	Myb domain, plants
SMART	SM00717	1.1E-11	135	183	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-11	136	180	IPR001005	SANT/Myb domain
CDD	cd00167	5.62E-9	138	181	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MLGANARLLN ATQLALNLAQ FTLLANSPAP PRAPSLLYSE FFSLLPHFHF PLPLPLLFPP 60 AAIPRSDSYS SKVAEEETEV NGKMNSNSTS SPSNPPPPPP PAPPPTTTSS SMETSTHTSD 120 ASGKKVRKPY TITKSRESWT EEEHDKFLEA LQLFDRDWKK IEDFVGSKTV IQIRSHAQKY 180 FLKIQKNGTV AHVPPPRPKR KAAHPALTTI ILIHAVCLHV TVLIPFPIPY PSLINTLPTA 240 YTQWADDPSM LINNSTNCIM ASPDDFANFH LVGGMPDIGS KGVATFNNFS ISGLGTSNRP 300 LPSSDKVKQE KQAPDVHGIP DFAEVYSFIG SVFDPDTKGH ARKLKEMDPI NYETVMLLMK 360 NLTMNLSSPR FEPIVSVLAP NSTYKKLTSS LYFLFVPTHY QSWLANAFYL EIESDQDSPC 420 CVHVDQIFLS FLNYIRSSLS RSLLNCDLLP *

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MLGANARLLN ATQLALNLAQ FTLLANSPAP PRAPSLLYSE FFSLLPHFHF PLPLPLLFPP  60
AAIPRSDSYS SKVAEEETEV NGKMNSNSTS SPSNPPPPPP PAPPPTTTSS SMETSTHTSD  120
ASGKKVRKPY TITKSRESWT EEEHDKFLEA LQLFDRDWKK IEDFVGSKTV IQIRSHAQKY  180
FLKIQKNGTV AHVPPPRPKR KAAHPALTTI ILIHAVCLHV TVLIPFPIPY PSLINTLPTA  240
YTQWADDPSM LINNSTNCIM ASPDDFANFH LVGGMPDIGS KGVATFNNFS ISGLGTSNRP  300
LPSSDKVKQE KQAPDVHGIP DFAEVYSFIG SVFDPDTKGH ARKLKEMDPI NYETVMLLMK  360
NLTMNLSSPR FEPIVSVLAP NSTYKKLTSS LYFLFVPTHY QSWLANAFYL EIESDQDSPC  420
CVHVDQIFLS FLNYIRSSLS RSLLNCDLLP *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269\|PubMed:21205033, ECO:0000269\|PubMed:21474993, ECO:0000269\|PubMed:21483796, ECO:0000269\|PubMed:23638299}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10014015

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269\|PubMed:21205033, ECO:0000269\|PubMed:22902701, ECO:0000269\|PubMed:23638299}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021621951.1	1e-125	protein REVEILLE 8-like isoform X1
Swissprot	Q8RWU3	1e-105	RVE8_ARATH; Protein REVEILLE 8
TrEMBL	A0A2C9VAJ9	1e-123	A0A2C9VAJ9_MANES; Uncharacterized protein
STRING	Lus10014015	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6735	34	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02840.3	7e-91	LHY/CCA1-like 1

Link Out ? help Back to Top
Phytozome	Lus10014015

Publications ? help Back to Top
Manfield IW, et al. Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis. Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9 [PMID:16845059] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Fogelmark K,Troein C Rethinking transcriptional activation in the Arabidopsis circadian clock. PLoS Comput. Biol., 2014. 10(7): p. e1003705 [PMID:25033214] Xing H, et al. LNK1 and LNK2 recruitment to the evening element require morning expressed circadian related MYB-like transcription factors. Plant Signal Behav, 2015. 10(3): p. e1010888 [PMID:25848708] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]