PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10013967

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NAC

Protein Properties

Length: 326aa MW: 35533.3 Da PI: 7.3646

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10013967	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	109.9	2.8e-34	65	207	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.......sg 81 lp+G++F+Ptd+e++ +L++kv +++ + +e+i+++d i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ + Lus10013967 65 LPAGMKFDPTDQEIL-GHLEAKVLSDPrkvhpmI--DEFIPTIDgengICYTHPEKLP-GVSNDGQVRHFFHRPSKAYTTGTRKRRKVHtdeqdgsET 158 799*********9.89*99996664322..233555544455******.666777888**************743345555478 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk++++l+ +++++g kk+Lv+y gr++k+ekt+Wvmh+y+l Lus10013967 159 RWHKTGKTRPILVDRETVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 207 8********99*********66589************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.36E-37	61	226	IPR003441	NAC domain
PROSITE profile	PS51005	32.992	65	226	IPR003441	NAC domain
Pfam	PF02365	3.5E-15	66	207	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MTTWCNNDNT SATAATSGGG DVVRLADEFP AVSRCPSCGH VMDSSSAFQD QGGGGGGGIQ 60 DLPGLPAGMK FDPTDQEILG HLEAKVLSDP RKVHPMIDEF IPTIDGENGI CYTHPEKLPG 120 VSNDGQVRHF FHRPSKAYTT GTRKRRKVHT DEQDGSETRW HKTGKTRPIL VDRETVKGFK 180 KILVLYTNYG RQRKPEKTNW VMHQYHLGNN EEEKDGELVV SKVFYQTQPR QCGGGGGGGG 240 SSSVSIKEVT SGGNSNVTPN LVDYYGSTFV SFEHSEGSQV NRESSPHHQH HHHHHHGLMM 300 IPSLVGSSYT RLADDASKGS SKELK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10013967

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015572383.1	1e-133	NAC domain-containing protein 73
Refseq	XP_015572430.1	1e-133	NAC domain-containing protein 73
Refseq	XP_021660928.1	1e-133	NAC domain-containing protein 73-like
Refseq	XP_021660929.1	1e-133	NAC domain-containing protein 73-like
Refseq	XP_021660930.1	1e-133	NAC domain-containing protein 73-like
Refseq	XP_021660931.1	1e-133	NAC domain-containing protein 73-like
Refseq	XP_021660932.1	1e-133	NAC domain-containing protein 73-like
Refseq	XP_021660933.1	1e-133	NAC domain-containing protein 73-like
Swissprot	O49459	1e-108	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	B9RB87	1e-132	B9RB87_RICCO; NAC domain-containing protein 21/22, putative
STRING	Lus10013967	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1228	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-108	NAC domain containing protein 73

Link Out ? help Back to Top
Phytozome	Lus10013967

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]