PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10013964
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 344aa    MW: 38340.1 Da    PI: 5.7832
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10013964genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.93.6e-4861431128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkk........leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                  lppGfrFhPtd+el+ +yLk+k+++++         +  + i++++iyk++PwdLp+++  +e+ew+fFs+rd+ky++g r+nr+++sgyWkatg+dk
  Lus10013964   6 LPPGFRFHPTDQELLIYYLKQKITSSSsppsvdncSDQVSLIADINIYKFDPWDLPNMAMFGENEWFFFSPRDRKYPNGARPNRTAASGYWKATGTDK 103
                  79*********************999988777654333347***************7777799*********************************** PP

          NAM  91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  ++ls+  +++  g+kk Lvfy+g+ pkg kt+W+m eyrl
  Lus10013964 104 PILSTngTSHCLGVKKALVFYQGKPPKGIKTNWMMLEYRL 143
                  ****95555569**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-573170IPR003441NAC domain
PROSITE profilePS5100555.6426170IPR003441NAC domain
PfamPF023654.5E-257143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MLKPSLPPGF RFHPTDQELL IYYLKQKITS SSSPPSVDNC SDQVSLIADI NIYKFDPWDL  60
PNMAMFGENE WFFFSPRDRK YPNGARPNRT AASGYWKATG TDKPILSTNG TSHCLGVKKA  120
LVFYQGKPPK GIKTNWMMLE YRLLDRSTQI RTLKRSMRLD DFVLCRVRLK TNTNGLQYPR  180
EEISFINCPP RGLTMTETMS FKDDVKATLA ASVDGYVGYD FQACLASLGN DADDADVEGS  240
TCNEQQVSPS YSISNGTTIM DHHRNPETKP SGAAGSSSDA LEFYAIRKAM SFGGDFEGID  300
TTPSKKMRLF EEDEDTVLSS GDNDFQASIC PTVNSRPIQG YYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-62517316168NO APICAL MERISTEM PROTEIN
1ut4_B8e-62517316168NO APICAL MERISTEM PROTEIN
1ut7_A8e-62517316168NO APICAL MERISTEM PROTEIN
1ut7_B8e-62517316168NO APICAL MERISTEM PROTEIN
3swm_A9e-62517319171NAC domain-containing protein 19
3swm_B9e-62517319171NAC domain-containing protein 19
3swm_C9e-62517319171NAC domain-containing protein 19
3swm_D9e-62517319171NAC domain-containing protein 19
3swp_A9e-62517319171NAC domain-containing protein 19
3swp_B9e-62517319171NAC domain-containing protein 19
3swp_C9e-62517319171NAC domain-containing protein 19
3swp_D9e-62517319171NAC domain-containing protein 19
4dul_A8e-62517316168NAC domain-containing protein 19
4dul_B8e-62517316168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269|PubMed:22278768}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10013964
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027935.13e-92PREDICTED: protein FEZ-like
SwissprotQ8H4S45e-74NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBLB9H2P99e-90B9H2P9_POPTR; Uncharacterized protein
STRINGLus100139640.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1781747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.13e-72NAC domain containing protein 25
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]