PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10013814 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | TCP | ||||||||
Protein Properties | Length: 216aa MW: 23134.2 Da PI: 10.1581 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 103.2 | 4.5e-32 | 56 | 130 | 3 | 66 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........s 66 +++++s++h+kv gR+RRvRl+a+caar+F+L++eLG+ +d++t+eWLl+ a+++++++tgt + Lus10013814 56 RRRSSSSDRHSKVYGRGRRVRLPALCAARIFQLTRELGHRSDGETVEWLLRHAEKSVIAATGTgiiptvpisstT 130 58999**********************************************************555555444430 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.4E-26 | 60 | 127 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 24.717 | 61 | 115 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MASSSTTFAV SDHLHQPQNH HHQSLHSLAL VPTTAAAESQ LATTTTTSSA VIPRPRRRSS 60 SSDRHSKVYG RGRRVRLPAL CAARIFQLTR ELGHRSDGET VEWLLRHAEK SVIAATGTGI 120 IPTVPISSTT GPPPIAVSPS SIPCRTRTIL TGHHGMFTPT PPPPSFHLDL EYRNMPFTAL 180 LLQPMAAAAA AAAASGGEGR QEEEKVFEDM KKQEA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10013814 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021660612.1 | 2e-59 | transcription factor TCP11-like | ||||
TrEMBL | A0A2C9VCC9 | 8e-57 | A0A2C9VCC9_MANES; Uncharacterized protein | ||||
STRING | Lus10013814 | 1e-154 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3819 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69690.1 | 2e-27 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10013814 |