PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10013782

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NAC

Protein Properties

Length: 382aa MW: 43277.9 Da PI: 7.4381

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10013782	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.7	4.6e-53	8	137	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPtdeel+++yLkkkv +k+++ evi+evd++k+ePw+L++ ++ + ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + + Lus10013782 8 VPPGFRFHPTDEELLHYYLKKKVMFQKFDM-EVIREVDLNKMEPWELQErcRIGStPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRN- 103 69**************************.99**********963433332556*********************************9. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 + +++g++ktLvfy+grap+g+ktdW+mheyrle Lus10013782 104 SFKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 137 8899**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-59	7	162	IPR003441	NAC domain
PROSITE profile	PS51005	58.054	8	162	IPR003441	NAC domain
Pfam	PF02365	7.9E-28	9	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MASSNGGVPP GFRFHPTDEE LLHYYLKKKV MFQKFDMEVI REVDLNKMEP WELQERCRIG 60 STPQNEWYFF SHKDRKYPTG SRTNRATNAG FWKATGRDKC IRNSFKKIGM RKTLVFYRGR 120 APHGQKTDWI MHEYRLENSD TNDQDHLNSN EDGWVVCRVF KKKNLFKING GGSNNHTNNI 180 NNTMNHHHHQ ALGSSSNLNS LSMLPTTTND DHIHHRQQQQ LLTMNAVGPT TSSTMDDNNN 240 DHGPDNSYDH THQLVVQQPT RYHQYLMQST AASYDHPCNL ELNNNNSNKQ QLEVDSLSLH 300 HYPAAVPPLF QMAARTDHQL AEWPTDEAAA ATTMQMFDPR MVAATTTTSS PPPPHLGSGA 360 NNINVGGGGC DGGNHQERLF P*

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MASSNGGVPP GFRFHPTDEE LLHYYLKKKV MFQKFDMEVI REVDLNKMEP WELQERCRIG  60
STPQNEWYFF SHKDRKYPTG SRTNRATNAG FWKATGRDKC IRNSFKKIGM RKTLVFYRGR  120
APHGQKTDWI MHEYRLENSD TNDQDHLNSN EDGWVVCRVF KKKNLFKING GGSNNHTNNI  180
NNTMNHHHHQ ALGSSSNLNS LSMLPTTTND DHIHHRQQQQ LLTMNAVGPT TSSTMDDNNN  240
DHGPDNSYDH THQLVVQQPT RYHQYLMQST AASYDHPCNL ELNNNNSNKQ QLEVDSLSLH  300
HYPAAVPPLF QMAARTDHQL AEWPTDEAAA ATTMQMFDPR MVAATTTTSS PPPPHLGSGA  360
NNINVGGGGC DGGNHQERLF P*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-51	8	164	17	167	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-51	8	164	17	167	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-51	8	164	17	167	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-51	8	164	17	167	NO APICAL MERISTEM PROTEIN
3swm_A	2e-51	8	164	20	170	NAC domain-containing protein 19
3swm_B	2e-51	8	164	20	170	NAC domain-containing protein 19
3swm_C	2e-51	8	164	20	170	NAC domain-containing protein 19
3swm_D	2e-51	8	164	20	170	NAC domain-containing protein 19
3swp_A	2e-51	8	164	20	170	NAC domain-containing protein 19
3swp_B	2e-51	8	164	20	170	NAC domain-containing protein 19
3swp_C	2e-51	8	164	20	170	NAC domain-containing protein 19
3swp_D	2e-51	8	164	20	170	NAC domain-containing protein 19
4dul_A	2e-51	8	164	17	167	NAC domain-containing protein 19
4dul_B	2e-51	8	164	17	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:20197506}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10013782

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010063731.1	1e-116	PREDICTED: protein BEARSKIN2
Swissprot	Q9SV87	1e-108	BRN2_ARATH; Protein BEARSKIN2
TrEMBL	A0A059BXQ4	1e-114	A0A059BXQ4_EUCGR; Uncharacterized protein
STRING	Lus10013782	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8752	33	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	1e-107	NAC domain containing protein 70

Link Out ? help Back to Top
Phytozome	Lus10013782

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]