PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10013579
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family TALE
Protein Properties Length: 547aa    MW: 60751.4 Da    PI: 7.6235
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10013579genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.61.1e-093373741954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Lus10013579 337 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 374
                  554459******************************88 PP

2BELL117.46.8e-38202273172
         BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  erqe+q++k kL+++l+eV++rY+qy++q+q+vis+Fe++ag gsa+ Yt+lAl++iSr+Fr+Lkdaia+qi
  Lus10013579 202 ERQEVQMRKGKLINMLDEVEQRYRQYNHQMQAVISAFEQAAGTGSARTYTALALQTISRQFRSLKDAIAGQI 273
                  79*********************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.7E-56128271IPR006563POX domain
PfamPF075261.4E-45133270IPR006563POX domain
PROSITE profilePS5007112.195315378IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-27317391IPR009057Homeodomain-like
SMARTSM003894.0E-8318382IPR001356Homeobox domain
CDDcd000865.19E-12318378No hitNo description
SuperFamilySSF466893.34E-16319381IPR009057Homeodomain-like
PfamPF059202.1E-18335374IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MTTYFHGGNP AEIQTEGLHT LLLMNPTYVH HYSDHDVSPP PPPHHFSSGH HHQQFVGVPL  60
DPHHYNSLYS PVDLSSDTRA SPRASHHHHH QQALSLTLSS HQQHRQQHQQ VSSSSGGVTV  120
NCGAGVVPTA AGVLSSSKYL KAVQELIDEV VNVNVNVNVN GGVGNGRTEA SKTGNTNNAV  180
TKEAESAASG YGKLSPELTT AERQEVQMRK GKLINMLDEV EQRYRQYNHQ MQAVISAFEQ  240
AAGTGSARTY TALALQTISR QFRSLKDAIA GQIKAANRSL GEEETPRKME GSRLKFVDHH  300
LRQQRALQQI GMMQHNAWRP QRGLPERSVS VLRAWLFEHF LHPYPKDSDK HMLAKQTGLT  360
RSQVSNWFIN ARVRLWKPLG GEMYIEEKEE KPRNHQIDLP SVPSMDQSSN NDHNSIEFVD  420
ERQSRDGYSF MGGQTNFMGA AFGQYPIAEI GARFDADQFA QRFSGNGVSL SLGLPHCENL  480
NLSGNHHTFL PNHNIQPRRR LDMGDANEFG AINGSDPHSS TTTYESINIQ NRKGFAAAQL  540
LPDFVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-14324379560Homeobox protein Meis2
3k2a_B1e-14324379560Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10013579
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8299083e-84EU829908.1 Linum usitatissimum clone LU0024H01 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027367697.10.0BEL1-like homeodomain protein 1 isoform X2
SwissprotQ9SJ561e-141BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A2P5STV90.0A0A2P5STV9_GOSBA; Uncharacterized protein
STRINGLus100135790.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-133BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]