PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10013579 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 547aa MW: 60751.4 Da PI: 7.6235 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.6 | 1.1e-09 | 337 | 374 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Lus10013579 337 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 374 554459******************************88 PP | |||||||
2 | BELL | 117.4 | 6.8e-38 | 202 | 273 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q++k kL+++l+eV++rY+qy++q+q+vis+Fe++ag gsa+ Yt+lAl++iSr+Fr+Lkdaia+qi Lus10013579 202 ERQEVQMRKGKLINMLDEVEQRYRQYNHQMQAVISAFEQAAGTGSARTYTALALQTISRQFRSLKDAIAGQI 273 79*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 6.7E-56 | 128 | 271 | IPR006563 | POX domain |
Pfam | PF07526 | 1.4E-45 | 133 | 270 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.195 | 315 | 378 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-27 | 317 | 391 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.0E-8 | 318 | 382 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.19E-12 | 318 | 378 | No hit | No description |
SuperFamily | SSF46689 | 3.34E-16 | 319 | 381 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.1E-18 | 335 | 374 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 547 aa Download sequence Send to blast |
MTTYFHGGNP AEIQTEGLHT LLLMNPTYVH HYSDHDVSPP PPPHHFSSGH HHQQFVGVPL 60 DPHHYNSLYS PVDLSSDTRA SPRASHHHHH QQALSLTLSS HQQHRQQHQQ VSSSSGGVTV 120 NCGAGVVPTA AGVLSSSKYL KAVQELIDEV VNVNVNVNVN GGVGNGRTEA SKTGNTNNAV 180 TKEAESAASG YGKLSPELTT AERQEVQMRK GKLINMLDEV EQRYRQYNHQ MQAVISAFEQ 240 AAGTGSARTY TALALQTISR QFRSLKDAIA GQIKAANRSL GEEETPRKME GSRLKFVDHH 300 LRQQRALQQI GMMQHNAWRP QRGLPERSVS VLRAWLFEHF LHPYPKDSDK HMLAKQTGLT 360 RSQVSNWFIN ARVRLWKPLG GEMYIEEKEE KPRNHQIDLP SVPSMDQSSN NDHNSIEFVD 420 ERQSRDGYSF MGGQTNFMGA AFGQYPIAEI GARFDADQFA QRFSGNGVSL SLGLPHCENL 480 NLSGNHHTFL PNHNIQPRRR LDMGDANEFG AINGSDPHSS TTTYESINIQ NRKGFAAAQL 540 LPDFVT* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 1e-14 | 324 | 379 | 5 | 60 | Homeobox protein Meis2 |
3k2a_B | 1e-14 | 324 | 379 | 5 | 60 | Homeobox protein Meis2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10013579 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU829908 | 3e-84 | EU829908.1 Linum usitatissimum clone LU0024H01 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027367697.1 | 0.0 | BEL1-like homeodomain protein 1 isoform X2 | ||||
Swissprot | Q9SJ56 | 1e-141 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | A0A2P5STV9 | 0.0 | A0A2P5STV9_GOSBA; Uncharacterized protein | ||||
STRING | Lus10013579 | 0.0 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G35940.3 | 1e-133 | BEL1-like homeodomain 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10013579 |
Publications ? help Back to Top | |||
---|---|---|---|
|