PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10013476 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C3H | ||||||||
Protein Properties | Length: 449aa MW: 48729.9 Da PI: 8.5447 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.1 | 1.1e-11 | 47 | 71 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C +++rtG+C yG+rC+++H++ Lus10013476 47 VPNCVYYMRTGFCGYGARCRYNHPR 71 789********************96 PP | |||||||
2 | zf-CCCH | 38.1 | 2.7e-12 | 92 | 116 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+f+++tGtCk+G++CkF+H++ Lus10013476 92 EPQCQFYLKTGTCKFGASCKFHHPK 116 688********************96 PP | |||||||
3 | zf-CCCH | 36.5 | 8.1e-12 | 137 | 162 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ +C+++++tG+Ck+G +CkF+H++ Lus10013476 137 GETECSYYLQTGHCKFGLNCKFHHPQ 162 7789********************97 PP | |||||||
4 | zf-CCCH | 35.7 | 1.5e-11 | 280 | 303 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C++++rtG CkyG+ C+++H++ Lus10013476 280 LECQYYLRTGDCKYGSACRYHHPR 303 58********************96 PP | |||||||
5 | zf-CCCH | 41.4 | 2.4e-13 | 323 | 348 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++t +C+f++++G+Ck+G++CkF H+ Lus10013476 323 PGTQPCSFYMQNGYCKFGSTCKFDHP 348 689**********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.347 | 44 | 72 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.9E-6 | 44 | 71 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-8 | 47 | 71 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-6 | 47 | 72 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-5 | 50 | 71 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.338 | 89 | 117 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-4 | 89 | 116 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.7E-10 | 92 | 116 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-6 | 93 | 117 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-4 | 95 | 116 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.3E-6 | 135 | 162 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.028 | 135 | 163 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-9 | 137 | 162 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.45E-6 | 138 | 163 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-4 | 141 | 161 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.277 | 276 | 304 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-4 | 276 | 303 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.5E-9 | 280 | 303 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.28E-6 | 281 | 305 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.8E-5 | 282 | 304 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.98E-7 | 322 | 349 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.6E-8 | 322 | 349 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.732 | 322 | 350 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.2E-11 | 323 | 348 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-6 | 325 | 347 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MELYSHNQSQ SGQQTDWTPA GPETGLEESM WRLGLTSNEP YPERLGVPNC VYYMRTGFCG 60 YGARCRYNHP RDRAAVEEAV RATGLYPERA GEPQCQFYLK TGTCKFGASC KFHHPKHRGG 120 SLSNASLNTH GYPLRPGETE CSYYLQTGHC KFGLNCKFHH PQPADSASAP QFYQQVQSPS 180 TNLRVRPPIL PGSYMQGTYG PPMLLPPGVV PIPGWSPYSA PVSPVLSPGA QTATSLYGVT 240 QLSATSPGPA RPYPSLLSFG SPSSSSTQKE PRFPERPGEL ECQYYLRTGD CKYGSACRYH 300 HPRDRAVPVS DSMLNPLGLP LRPGTQPCSF YMQNGYCKFG STCKFDHPVG GAVGYTPPTA 360 ASLIDMPPVA PYLVGSLLAT LAPSSPSYEL RPELMSAPRN TSSSSVGLVF SQTGSLPPFT 420 DLQLSSQTSL PSTSSRSTRH GVEMRRSF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10013476 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021608726.1 | 0.0 | zinc finger CCCH domain-containing protein 32-like | ||||
Swissprot | Q84W91 | 0.0 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A2C9WP71 | 0.0 | A0A2C9WP71_MANES; Uncharacterized protein | ||||
STRING | Lus10013476 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF983 | 34 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 1e-159 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10013476 |