PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10013243
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 313aa    MW: 34339.8 Da    PI: 7.16
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10013243genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00034115137123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C + F ++  L  H++ H
  Lus10013243 115 FPCNYCRRKFYSSQALGGHQNAH 137
                  89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.26E-6113142No hitNo description
PROSITE profilePS5015711.24115142IPR007087Zinc finger, C2H2
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MHQLNSKFDL ENNESENSSQ VASNQSAQEP SPDRSKDSTT TTTPSSSLSE LIKLQQIPAP  60
PDLSLDLSLQ LHSQDSDKFV EKFITATEHE TSNEEQQPSA PTPPGGSGGA MPRVFPCNYC  120
RRKFYSSQAL GGHQNAHKRE RTIAKRAMRM GIFSDRYNSL ASLPLHGTTF RNLGIKAHTA  180
MHHQSHIIPF QRPPLSAQVQ VQLQPEYNAR AGFGARFEQS YYGVPVLTTT DEEDVSLYWP  240
GSFRQVGSEG FATTTISSNN SNQFGLHFAE RPNTTTTTAR TATGFVAMEG RQRTDHCSSS  300
SSSSAPDLTL KL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10013243
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012072362.13e-81zinc finger protein 4
RefseqXP_012072363.13e-81zinc finger protein 4
RefseqXP_012072364.13e-81zinc finger protein 4
RefseqXP_020535010.13e-81zinc finger protein 4
TrEMBLA0A067KT796e-80A0A067KT79_JATCU; Uncharacterized protein
STRINGLus100132430.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13233192
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.17e-34zinc finger protein 4