PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10013224
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Nin-like
Protein Properties Length: 702aa    MW: 77807.5 Da    PI: 5.2861
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10013224genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK82.83.3e-26463512352
       RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                   +isle+l+++Fs+++kdAA +Lgvc T+LKriCRq+GI RWP+Rk+k++
  Lus10013224 463 RRISLEVLRQHFSGTLKDAAISLGVCSTTLKRICRQHGITRWPSRKLKKV 512
                  68**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.79449532IPR003035RWP-RK domain
PfamPF020421.0E-24465512IPR003035RWP-RK domain
SuperFamilySSF542775.33E-21607694No hitNo description
PROSITE profilePS5174524.937612695IPR000270PB1 domain
SMARTSM006665.1E-22612695IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2403.3E-20613691No hitNo description
PfamPF005641.1E-17614694IPR000270PB1 domain
CDDcd064078.04E-37614693No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MDGSWQSGMM LGSKASVMDS DYIDDFLLDG SWLEATDVSE FLNYSPSNHD LGATLNNVDT  60
STATTSQSSN EEKSSSASSV KDRLAGAIGC IRDLINDEDA LVQIWVPMEE MGRQVLTTKD  120
QPFALDGGLA NYRDISTIYQ FPAEQESDFS SMPGRVFLAQ VPEWSPDVQL FTSDEYPRVD  180
HARKYNVRGT LAVPVFEQNS ETCLGVVEIL TSRRGIKYQS ELEKVSKALE AVYLRSCRTS  240
ISRNMNVTAE MAYKAALPEI KQVLKTACET HELPLAQTWI PCTIQHQNIQ HHPDSNCPHH  300
CLSTVDEACI TRNPKVKGFH KACSEQHLLK GQGVAGKALA TNEPCFSNDI TRYNNDEYPL  360
SRDARVFGLC GAVAIRLRST VIAGEVDFVL EFFLPGECRT LDEQHRMLNS LSIVVGDACR  420
TLRVVTDEEL ECEKGVEFWG QRGNEEGWKL GKSVERKRIK ADRRISLEVL RQHFSGTLKD  480
AAISLGVCST TLKRICRQHG ITRWPSRKLK KVGHSLKKLQ VVMDSVEGTS GSLHINSFYT  540
TFPNLDSSNP PDPLSSIIIT QPDQDASKPK PTSSPSSCSQ SSGSSADQLP VRSPAGEEEQ  600
GNVVSKNSSN RVQRVKVAYG DEIVRFRVSS SWGYGDLLVE IGRRFGIEEM KKFDVKYLDD  660
DSEWVLLTCD EDIDECVEVC HASVNQTVKL LLQVSSRGSS D*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10013224
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018451304.10.0PREDICTED: protein NLP4-like
RefseqXP_018451305.10.0PREDICTED: protein NLP4-like
SwissprotQ9SFW80.0NLP5_ARATH; Protein NLP5
TrEMBLA0A3P6BA000.0A0A3P6BA00_BRACM; Uncharacterized protein
STRINGLus100132240.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12373399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76350.10.0Nin-like family protein