PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10013037
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family TALE
Protein Properties Length: 326aa    MW: 36844.9 Da    PI: 4.8318
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10013037genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.11.6e-092683022155
                  HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
     Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                  k +yp+++++  LA+++gL+++q+ +WF N+R ++
  Lus10013037 268 KWPYPTEADKIALAESTGLDQKQINNWFINQRKRH 302
                  679*****************************885 PP
2ELK284.8e-10222243122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  +LK++Llr ++++++sLk EFs
  Lus10013037 222 DLKDRLLRRFGSHISSLKLEFS 243
                  69*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012559.8E-2384128IPR005540KNOX1
PfamPF037901.2E-2186127IPR005540KNOX1
SMARTSM012565.9E-26133184IPR005541KNOX2
PfamPF037914.2E-24137183IPR005541KNOX2
PROSITE profilePS512139.586222242IPR005539ELK domain
PfamPF037891.7E-7222243IPR005539ELK domain
SMARTSM011885.6E-5222243IPR005539ELK domain
PROSITE profilePS5007112.438242305IPR001356Homeobox domain
SuperFamilySSF466892.95E-19244317IPR009057Homeodomain-like
SMARTSM003891.2E-12244309IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.5E-28247306IPR009057Homeodomain-like
CDDcd000863.53E-13254306No hitNo description
PfamPF059202.0E-17262301IPR008422Homeobox KN domain
PROSITE patternPS000270280303IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MDGMYGLHST TAEYSDKALM SPENLILPSD YQSFLASTDS FRDRNHHSSS TPSGIPIFGS  60
DELSVISSEA ASITHHHREE DFTSLIKAKI ASHPSYPRLL DAYIDCQKVG APPEIASFLD  120
EIRRENDVCR RDAGSCFGPD PELDEFMETY CDVLVKYKSD LERPFDEATS FLNNIEIQLR  180
NLCTGASIRR SLSDEGAVSS EDEVSGGEAD GLEAQPSSED RDLKDRLLRR FGSHISSLKL  240
EFSKNKKKGK LPKEARQTLL EWWNVHYKWP YPTEADKIAL AESTGLDQKQ INNWFINQRK  300
RHWKPSENMQ FGLMDSLSGQ FYTDD*
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10013037
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8307450.0EU830745.1 Linum usitatissimum clone LU0029G10 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007044712.11e-167PREDICTED: homeobox protein knotted-1-like 6
SwissprotQ84JS61e-146KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A061EE171e-165A0A061EE17_THECC; KNOTTED1-like homeobox gene 6
STRINGLus100130370.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-138KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]