PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10013028 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | YABBY | ||||||||
Protein Properties | Length: 224aa MW: 25054.1 Da PI: 4.7266 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 196.4 | 1.2e-60 | 13 | 208 | 4 | 168 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas.....qllaaeshldeslkee.....................lleel 75 ss eq+CyvqC+fC+til+vsvP +s+++vvtvrCGhCtsllsvn++kas l a+ +h ++++ + + Lus10013028 13 ASSLEQICYVQCGFCTTILLVSVPCSSMSMVVTVRCGHCTSLLSVNMMKASfvpfhLLAASLDHCGHDIVAPprdhppcqslqdqslnerqeeV---- 106 56789*******************************************9998888455667899999887767999999998777544433321.... PP YABBY 76 kveeenlksnvekee.sastsvssekl.........senedeevprvpp...virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160 e++ s +e+ee +++ ++ +l ++ned+e p + +++PPekrqr+Psayn+fikeei+r+k++nP ++h+eafs+aaknW Lus10013028 107 ----EEVASPEEEEEeDPEEGDRKGTLsrmnsstsdDNNEDHEDPTTNLnrtINKPPEKRQRAPSAYNCFIKEEIKRLKSENPTMAHKEAFSMAAKNW 200 ....2222222222201121112222233355565545555555443212249********************************************* PP YABBY 161 ahfPkihf 168 ahfP++++ Lus10013028 201 AHFPPVYY 208 *****987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.2E-58 | 16 | 208 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 6.02E-9 | 150 | 204 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.2E-5 | 156 | 204 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MPLSHMLDLS SSASSLEQIC YVQCGFCTTI LLVSVPCSSM SMVVTVRCGH CTSLLSVNMM 60 KASFVPFHLL AASLDHCGHD IVAPPRDHPP CQSLQDQSLN ERQEEVEEVA SPEEEEEEDP 120 EEGDRKGTLS RMNSSTSDDN NEDHEDPTTN LNRTINKPPE KRQRAPSAYN CFIKEEIKRL 180 KSENPTMAHK EAFSMAAKNW AHFPPVYYRV EEDGIGDQIR LTR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10013028 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021633751.1 | 7e-70 | axial regulator YABBY 4 isoform X4 | ||||
Swissprot | Q9LDT3 | 4e-61 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A2P5FMG1 | 8e-69 | A0A2P5FMG1_TREOI; YABBY protein | ||||
STRING | Lus10013028 | 1e-167 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6144 | 28 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 2e-49 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10013028 |
Publications ? help Back to Top | |||
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