PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10012927
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 428aa    MW: 47703.8 Da    PI: 6.8554
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10012927genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.31.3e-3571531128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....lelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........ 77 
                  lp+G++F+Ptd+el+ e+L++kve+ +     +           +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+        
  Lus10012927   7 LPAGVKFDPTDQELI-EHLEAKVEEANgdmksH---PlidefipTIEGDdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqnescdf 99 
                  799************.99*******99665551...144444433665546**********.555666799******************879999999 PP

          NAM  78 ..tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                    t + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Lus10012927 100 qgTGETRWHKTGKTRPVMV-NGSQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 153
                  9999999************.9999**********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-382172IPR003441NAC domain
PROSITE profilePS5100532.747172IPR003441NAC domain
PfamPF023653.4E-168153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MQDWLGLPAG VKFDPTDQEL IEHLEAKVEE ANGDMKSHPL IDEFIPTIEG DDGICYTHPE  60
KLPGVTRDGL SRHFFHRPSK AYTTGTRKRR KIQNESCDFQ GTGETRWHKT GKTRPVMVNG  120
SQKGCKKILV LYTNFGKNRK PEKTNWVMHQ YHLGQHEEEK EGELVVSKIF YQTQPRQCNW  180
VDRTSTGTTS SNVAANANAA VGGEGSVISI DHHLIGSRRV DMSCSSREMI NHHHQRESEF  240
PGGVTAAAVM SSYSSMDHHH HFGFPNQFSK GFDHEVGTRG GEASTAREGD QGCNELGHGD  300
PHQQQQQNQH AVAAVIVGNH ETNINNAATS FHMISRPSPP ISNMISPPPF HHASVVLDQD  360
PYNVSRLFLQ NQLLHQQQQH QQQEEEQHHH KVAGEGRRSA SGLEELIMGC TSSSTTSHDI  420
KEVSIIH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10012927
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021606174.11e-162uncharacterized protein LOC110610523 isoform X2
TrEMBLA0A0M4FP361e-162A0A0M4FP36_MANES; NAC transcription factors 71
STRINGLus100129270.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45203458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-114NAC domain containing protein 75