PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10012870
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 308aa    MW: 34460.1 Da    PI: 5.5973
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10012870genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.26.8e-23132194259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSST..TEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedp..kvveitYegeHnhe 59 
                  +D+++WrKYGqKe+ +++fprsYYrCt++   gC+++k+v+  ++++  ++  itY g H+++
  Lus10012870 132 HDEHSWRKYGQKEILNAKFPRSYYRCTHKydqGCKATKQVQMLEQETkeTMYSITYMGLHTCR 194
                  7***************************99999********988765226899********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-22126194IPR003657WRKY domain
SuperFamilySSF1182903.92E-21130194IPR003657WRKY domain
SMARTSM007747.4E-32131195IPR003657WRKY domain
PROSITE profilePS5081115.801133194IPR003657WRKY domain
PfamPF031065.1E-23133194IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MGMQGNNKLR QEMAMKELAQ GHGFASQLQL LLKNNKDHPA AADELVNKIL ESFTCGISAL  60
MSTAASTSMV AISDQAGEQQ SSVSGMYEDS GESCRKRSSA AAAGKSGGRD NRGSYKRRKS  120
GHSDVKISSS MHDEHSWRKY GQKEILNAKF PRSYYRCTHK YDQGCKATKQ VQMLEQETKE  180
TMYSITYMGL HTCRNATGVS RSSVEPLSTA VNVKKEIRTM VNVDDINNNV NNEENPSEVM  240
TEINDNVDLW MQGLESFDQA EEAISNYDYH HYSNYGFCGD QSGQVLDFDF GVKDIDDFET  300
DFRFDYH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-18127194469OsWRKY45
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10012870
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100128700.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47003056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.16e-39WRKY DNA-binding protein 70