PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10012728
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family AP2
Protein Properties Length: 536aa    MW: 58328.2 Da    PI: 6.6311
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10012728genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.61e-10250306155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++gr++A+++d  +       rk  + g ++ +++Aa+a++ a++k++g
  Lus10012728 250 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEDKAARAYDLAALKYWG 306
                  57*******************4444.2344336655.7799999*************98 PP
2AP250.16.7e-16349400155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Lus10012728 349 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 400
                  57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.37E-18250316No hitNo description
SuperFamilySSF541711.18E-14250316IPR016177DNA-binding domain
PfamPF008471.9E-8250306IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-12251315IPR001471AP2/ERF domain
PROSITE profilePS5103217.346251314IPR001471AP2/ERF domain
SMARTSM003801.6E-22251320IPR001471AP2/ERF domain
PRINTSPR003672.8E-6252263IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18349409IPR016177DNA-binding domain
CDDcd000187.31E-11349408No hitNo description
PfamPF008472.6E-10349400IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-18350408IPR001471AP2/ERF domain
SMARTSM003803.2E-31350414IPR001471AP2/ERF domain
PROSITE profilePS5103219.203350408IPR001471AP2/ERF domain
PRINTSPR003672.8E-6390410IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MAPVPAAVGS NWLSFSLFSF ALPPMEMLRP YDEAAAAAAA AAAASGDDST SHHHYFLDNF  60
YSHGWGNPKD GEAVAETALL TSFMDQQQSG GGRTPPPQPK LEDFLGDSAA MVRYAENSQT  120
GGGDAQDSSS LTQIYDNGGA SAYFNDHQQD LKAIAAFQGG FSTNSGASEV DDPGRSSTEF  180
MAAVTQSVGN ELAYSRNALS LAVNTAAAPS AHNNNNDSSS NSSEKAMAVV SVVDSDCNKK  240
LADTFGQRTS IYRGVTRHRW TGRYEAHLWD NSCRREGQAR KGRQGGYDKE DKAARAYDLA  300
ALKYWGPTAT TNFPVSNYNK ELEEMKYASK QEFIASLRRK SSGFSRGASI YRGVTRHHQQ  360
GRWQARIGRV AGNKDLYLGT FATEEEAAEA YDIAAIKFRG MNAVTNFEMN RYDVEAIMKS  420
ALPIGGAAKR LKISLETEQK PTLTHHDPQQ HHHDENNISF GSVQQQQQQI PSIPCGIPYD  480
AAYYHHSLFH HLPPAAGNNQ GQGGSGIAVP TSNMLTPPMM PRTTDFFLWP HHQSY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10012728
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021662718.10.0AP2-like ethylene-responsive transcription factor AIL6 isoform X2
SwissprotQ52QU21e-169AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A067KD770.0A0A067KD77_JATCU; Uncharacterized protein
STRINGLus100127280.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48103149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-163AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]