PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10012678
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 328aa    MW: 35888 Da    PI: 10.3792
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10012678genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY31.73.2e-10133155123
                  ---SS-EEEEEEE--TT-SS-EE CS
         WRKY   1 ldDgynWrKYGqKevkgsefprs 23 
                  ldDgy+WrKYGqK+vk++ +pr+
  Lus10012678 133 LDDGYKWRKYGQKVVKNTLHPRG 155
                  59*******************97 PP
2WRKY101.64.6e-32248306159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vk++ +prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  Lus10012678 248 LDDGYKWRKYGQKVVKNTLHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHAHS 306
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-10117155IPR003657WRKY domain
PROSITE profilePS5081112.897128156IPR003657WRKY domain
SuperFamilySSF1182905.1E-9129156IPR003657WRKY domain
SMARTSM007742.8E-4133184IPR003657WRKY domain
PfamPF031061.7E-6134155IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.8E-32232306IPR003657WRKY domain
PROSITE profilePS5081128.977243308IPR003657WRKY domain
SuperFamilySSF1182906.15E-28244307IPR003657WRKY domain
SMARTSM007742.2E-37248307IPR003657WRKY domain
PfamPF031063.4E-25249305IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MVATSSPSAA AVNNISTHHH HHADLASLQR STAPLPNLWG WPGELGVNSN KSRPPENISA  60
NYNSYNSLVD NSDGGGGSSS KVMSSSNVTT TAAMKLKKKI GIRNSGVGGG GCRKKVREPR  120
FSFKTLSEEV DVLDDGYKWR KYGQKVVKNT LHPRGWPGEL GVNSNKSRPP ENISANYNSY  180
NSLVDNSDGG GGSSSKVMSS SNVTTTAAMK LKKKIGIRNS GVGGGGCRKK VREPRFSFKT  240
LSEEVDVLDD GYKWRKYGQK VVKNTLHPRS YYRCTQDNCR VKKRVERLAE DPRMVITTYE  300
GRHAHSPSHD QDDSNSHSPT HLSNFFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-252423051174Probable WRKY transcription factor 4
2lex_A8e-252423051174Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10012678
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008392017.21e-56probable WRKY transcription factor 13
RefseqXP_009354053.13e-56PREDICTED: probable WRKY transcription factor 13
RefseqXP_009354059.11e-56PREDICTED: probable WRKY transcription factor 13
RefseqXP_009354060.11e-56PREDICTED: probable WRKY transcription factor 13
TrEMBLA0A498HYP52e-55A0A498HYP5_MALDO; Uncharacterized protein
STRINGLus100126780.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40793361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.13e-50WRKY DNA-binding protein 13