PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10012602

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

MYB_related

Protein Properties

Length: 702aa MW: 76859 Da PI: 5.4758

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10012602	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.4	7e-08	24	51	1	29
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 r rWT eE+ ++++a k++G W +I + Lus10012602 24 RERWTVEEHNRFLEALKLYGRA-WQRIEA 51 78****************88.9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.06E-5	18	49	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.0E-4	24	52	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 702 aa Download sequence Send to blast
MDTNSSGEDL FIKTRKPYTI TKQRERWTVE EHNRFLEALK LYGRAWQRIE AKENLNSQLE 60 KEAVAKGVPI GQALDIDIPP PRPKRKPSNP YPRKTGFSSI TSKDGKVSTS LPVPRNQQVL 120 DLETEPLPEK PSVDEKSTGA KGIHDDSCSE VFTSSSSVYS LKKYPTPQQE GPTSPGSFRE 180 FIPRLKDVVS QDAPNELHFT TEFDGNTLQM ENSYHLHDNI QQGKKVDDHT NILPGDKMQS 240 MQNFLEHIPM QILDGKTCTQ TPSSDVPRHK SIVPGGESQA QSTVYSLLTT STAEIQNNFP 300 ASLHPSFPPV VRSQDEYRSF LQISSTFSSL VVSTLLQNPA AHAAASFAAS FWPFANVENA 360 ADSTACTKEV FSSREVNSAP SMASIAAATV AAATAWWAAH GLLPMCAPLQ TAFPCPPATT 420 VPGDAKMESK EVSLEDAPLN DEWMEPEHLE AAQAQNSFSK SSDKYSSECE ENGGFKPNPT 480 PKVPHQETNA TPPEVHDCNK SKNRKQVDRS SCGSNTASSS EVETDALEKH EKDKGETKEA 540 ETNPPTPADS RRSRSNNVST SDSWKSVSEE GRLAFRALFS REVLPQSFSP PPKGEGKNGQ 600 HEADSDEVQM PYANGRNGDS EVLDLNSSKT WCQEGEEKNP SIPSCFSAVG VGNGKLKGQR 660 TGFKPYKRCS VEAKENRSCS CQGEEKESKR ICLGLEPEAS T*

Sequence ? help Back to Top

Protein Sequence Length: 702 aa Download sequence Send to blast

MDTNSSGEDL FIKTRKPYTI TKQRERWTVE EHNRFLEALK LYGRAWQRIE AKENLNSQLE  60
KEAVAKGVPI GQALDIDIPP PRPKRKPSNP YPRKTGFSSI TSKDGKVSTS LPVPRNQQVL  120
DLETEPLPEK PSVDEKSTGA KGIHDDSCSE VFTSSSSVYS LKKYPTPQQE GPTSPGSFRE  180
FIPRLKDVVS QDAPNELHFT TEFDGNTLQM ENSYHLHDNI QQGKKVDDHT NILPGDKMQS  240
MQNFLEHIPM QILDGKTCTQ TPSSDVPRHK SIVPGGESQA QSTVYSLLTT STAEIQNNFP  300
ASLHPSFPPV VRSQDEYRSF LQISSTFSSL VVSTLLQNPA AHAAASFAAS FWPFANVENA  360
ADSTACTKEV FSSREVNSAP SMASIAAATV AAATAWWAAH GLLPMCAPLQ TAFPCPPATT  420
VPGDAKMESK EVSLEDAPLN DEWMEPEHLE AAQAQNSFSK SSDKYSSECE ENGGFKPNPT  480
PKVPHQETNA TPPEVHDCNK SKNRKQVDRS SCGSNTASSS EVETDALEKH EKDKGETKEA  540
ETNPPTPADS RRSRSNNVST SDSWKSVSEE GRLAFRALFS REVLPQSFSP PPKGEGKNGQ  600
HEADSDEVQM PYANGRNGDS EVLDLNSSKT WCQEGEEKNP SIPSCFSAVG VGNGKLKGQR  660
TGFKPYKRCS VEAKENRSCS CQGEEKESKR ICLGLEPEAS T*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10012602

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021611101.1	0.0	protein LHY-like isoform X2
TrEMBL	A0A251LUQ0	0.0	A0A251LUQ0_MANES; Uncharacterized protein
STRING	Lus10012602	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4860	25	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01060.3	3e-77	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Lus10012602