PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10012521

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

Protein Properties

Length: 97aa MW: 10643 Da PI: 7.1902

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10012521	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	39.4	1.1e-12	3	74	17	88
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 ++pk+f+++ +++ + t l + +v+++ + k +r l++GW +F+ +n L++gD++vF+l+ + + Lus10012521 3 TIPKSFMDNVEEVYGGAETAELWV-AAKCRRVRIRRSVKESRSNLGSGWGDFATDNSLEVGDVCVFELKCEeD 74 699999977755544444555444.2344455554466666777***********************997634 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	10.785	1	96	IPR003340	B3 DNA binding domain
CDD	cd10017	5.03E-11	3	94	No hit	No description
SuperFamily	SSF101936	7.06E-12	3	94	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.2E-12	3	95	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.1E-9	3	72	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 97 aa Download sequence Send to blast
MQTIPKSFMD NVEEVYGGAE TAELWVAAKC RRVRIRRSVK ESRSNLGSGW GDFATDNSLE 60 VGDVCVFELK CEEDDGVGGG SSGRKVVFGV HIFRRR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10012521

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10012521	9e-64	(Linum usitatissimum)

Link Out ? help Back to Top
Phytozome	Lus10012521