PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10012338

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

SAP

Protein Properties

Length: 144aa MW: 15048.5 Da PI: 4.5984

Description

SAP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10012338	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SAP	82.1	7.4e-26	13	93	3	81
SAP 3 sssssssseseegseggeggdass...gesegpsssrqraanevwpePflealatqvaidasrslGrlaaasalanvfqvcs 81 ssssssss +++ + g ++s+ ++egps+sr+r ++evwpePflealat++a da+ ++Grl+aa+al nvfq s Lus10012338 13 SSSSSSSSGNDNND-GRLVVGSSAgtgHDYEGPSRSRPRGVYEVWPEPFLEALATHIAADAALFSGRLSAAQALSNVFQFLS 93 33333333333322.22222322234589*************************************************9866 PP

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MSSSLPPLPS SSSSSSSSSS GNDNNDGRLV VGSSAGTGHD YEGPSRSRPR GVYEVWPEPF 60 LEALATHIAA DAALFSGRLS AAQALSNVFQ FLSCQFNFIL GRGEIDDDLT EPGVLLLRIY 120 SSDHDFSSGQ QLCCGCSLKG GRN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10012338

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012081526.1	7e-18	transcriptional regulator STERILE APETALA
TrEMBL	A0A067K1B3	2e-16	A0A067K1B3_JATCU; Uncharacterized protein
STRING	Lus10012338	6e-99	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7687	31	46

Link Out ? help Back to Top
Phytozome	Lus10012338