PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10012323 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | GRAS | ||||||||
Protein Properties | Length: 524aa MW: 58116.3 Da PI: 6.4533 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 451.7 | 4.6e-138 | 147 | 518 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l+++L++cA+avs++d+ aq+l+ +l++++s +g+p+qRl ay++e+L ar+++s+s+++kal++++ + s++ l+++++++ev+P+lkf+++ a Lus10012323 147 LKQVLVACAKAVSENDQLIAQWLIDELRNMVSVSGEPIQRLGAYMLEGLVARMSSSGSSICKALRCKDPA---SADLLSYMHILYEVCPYLKFGYMSA 241 5799*****************************************************************9...9************************ PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N aI ea++ge+rvHi+Df+i+qG QW++L+qa+a+Rp+gpp +RiTgv+++ s + l+ +g+rL+k+A++++vpfef++ +a + ++++e+L Lus10012323 242 NGAIAEAMKGENRVHIVDFQIGQGSQWISLIQAFAARPGGPPFIRITGVDDSMSAyaRGGGLNIVGKRLSKLAKSFKVPFEFHAAAALNGCKIQVENL 339 ***************************************************888789999************************8777********** PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 ++++gEalaVn++++lh+++desvs+e++rd++L+lvk+lsPkvv++veqea++n++ F+ rfle+l+yy+a+f+s++++l r++++ri++E+++l++ Lus10012323 340 EIRSGEALAVNFAFMLHHMPDESVSTENHRDRLLRLVKGLSPKVVTLVEQEANTNTAAFFPRFLETLDYYTAMFESMDVTLQRDHKDRISIEQHCLAK 437 ************************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++vnv+acegaer+erhe l+kW++r+++aGF+p pls+ +++++k+ll++++++ yr+ee+ g+l+lgWk+r Lv+ +aW+ Lus10012323 438 DVVNVIACEGAERVERHELLGKWKSRFSMAGFSPCPLSSLVNATIKTLLANYSKQ-YRLEEKAGALYLGWKNRDLVASCAWK 518 *****************************************************66.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 68.582 | 121 | 499 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.6E-135 | 147 | 518 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0004871 | Molecular Function | signal transducer activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 524 aa Download sequence Send to blast |
MSGSLYYQPM QEFEANYMPQ FQHLGHQLCY NGSSSQATHF PFQTEQYCTL ESSSLNGTTY 60 AAIYSNFSPN GSPMSQHESP ISSSCITDDA NDIKHKLREL ETAMLGPDSD NFVMSMDGRT 120 VQEGIKIESP EVDCLREIMG AISRGELKQV LVACAKAVSE NDQLIAQWLI DELRNMVSVS 180 GEPIQRLGAY MLEGLVARMS SSGSSICKAL RCKDPASADL LSYMHILYEV CPYLKFGYMS 240 ANGAIAEAMK GENRVHIVDF QIGQGSQWIS LIQAFAARPG GPPFIRITGV DDSMSAYARG 300 GGLNIVGKRL SKLAKSFKVP FEFHAAAALN GCKIQVENLE IRSGEALAVN FAFMLHHMPD 360 ESVSTENHRD RLLRLVKGLS PKVVTLVEQE ANTNTAAFFP RFLETLDYYT AMFESMDVTL 420 QRDHKDRISI EQHCLAKDVV NVIACEGAER VERHELLGKW KSRFSMAGFS PCPLSSLVNA 480 TIKTLLANYS KQYRLEEKAG ALYLGWKNRD LVASCAWKIT ERH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 9e-62 | 149 | 518 | 6 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10012323 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021675700.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_021675701.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_021675702.1 | 0.0 | scarecrow-like transcription factor PAT1 | ||||
Swissprot | Q9LDL7 | 0.0 | PAT1_ARATH; Scarecrow-like transcription factor PAT1 | ||||
TrEMBL | A0A067KCD6 | 0.0 | A0A067KCD6_JATCU; GRAS20 protein | ||||
STRING | Lus10012323 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1653 | 34 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10012323 |
Publications ? help Back to Top | |||
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