PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10012322
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 405aa    MW: 44497.1 Da    PI: 8.0874
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10012322genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-303390260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
                 +DgynWrKYGqK vkgsef rsYYrCt+++C+vkk++ers+ ++k+ +i+Y g+H+h+k
  Lus10012322 33 EDGYNWRKYGQKLVKGSEFIRSYYRCTHPNCQVKKQLERSH-EGKLADIVYFGQHDHPK 90
                 8****************************************.***************85 PP
2WRKY106.71.1e-33182240159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dgy+WrKYGqK+vkg+++prsYYrC+sagCpvkk+ver+++dpkvv++ YegeH+h+
  Lus10012322 182 VNDGYRWRKYGQKMVKGNPNPRSYYRCSSAGCPVKKHVERASHDPKVVITSYEGEHDHD 240
                  58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.6762791IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-262891IPR003657WRKY domain
SuperFamilySSF1182901.7E-242991IPR003657WRKY domain
SMARTSM007746.0E-353290IPR003657WRKY domain
PfamPF031062.2E-233389IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.8E-36168242IPR003657WRKY domain
SuperFamilySSF1182903.14E-29175242IPR003657WRKY domain
PROSITE profilePS5081136.46177242IPR003657WRKY domain
SMARTSM007743.6E-39182241IPR003657WRKY domain
PfamPF031061.9E-26183239IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MKHSKRKAPS TAEQPLQSVK DGRSPAIREK VLEDGYNWRK YGQKLVKGSE FIRSYYRCTH  60
PNCQVKKQLE RSHEGKLADI VYFGQHDHPK PQSNIPLTVG SKVRPPINSV NASQMSTVTS  120
SEDVKAVPPE SARKRDEIDN DDDPQSKRQK KVNRSVEPSA VVEKPVGEPR IVVKTLSEED  180
IVNDGYRWRK YGQKMVKGNP NPRSYYRCSS AGCPVKKHVE RASHDPKVVI TSYEGEHDHD  240
MPPSRTVTNN IAGLDVRTST PASGQLDSKP ACNTPDANNK TKEQLNGESS AKAIEGTVKE  300
AVDKGNDMVS PRSSALDEMK SKNQQNDKSC PKEESDAAAG HDSDATTSFI LEGRTNDVQH  360
TCESKETSEE NGSASASNIH SVASHPDSKS TQQHISDSEA VQAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-3731243275WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10012322
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012081426.11e-134WRKY transcription factor 1
SwissprotQ9SI376e-85WRKY1_ARATH; WRKY transcription factor 1
TrEMBLM9TGC21e-133M9TGC2_JATCU; WRKY transcription factor 01.1
STRINGLus100123220.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93583343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.25e-91zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]