PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10012302
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HB-other
Protein Properties Length: 2199aa    MW: 244430 Da    PI: 8.2219
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10012302genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox42.98.2e-149921041857
                   -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
     Homeobox    8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57  
                   +++qle+L e+F+++ yp+ +++e LA+ l+Lt +qV+vWF  +R +ek+
  Lus10012302  992 SPHQLEALREFFANEEYPTNSDMEGLAELLDLTLCQVRVWFVEKRRREKR 1041
                   89**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465654.32E-34830963IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1103.2E-35845963IPR001623DnaJ domain
SMARTSM003892.3E-119851046IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-129901044IPR009057Homeodomain-like
CDDcd000869.40E-99901032No hitNo description
SuperFamilySSF466894.28E-129901043IPR009057Homeodomain-like
PROSITE profilePS5007114.3829921042IPR001356Homeobox domain
PfamPF000462.8E-119921041IPR001356Homeobox domain
SMARTSM005712.1E-714271486IPR018501DDT domain
PROSITE profilePS5082711.18414271486IPR018501DDT domain
PfamPF027913.1E-914281483IPR018501DDT domain
PfamPF156121.6E-917081749IPR028942WHIM1 domain
PfamPF156135.7E-1218421915IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 2199 aa     Download sequence    Send to blast
MDDFPGILAR DFGFKPQGKS APMAPPRNSN TTFSSSFGGQ EPTTRSASSM SNKSSPVFYD  60
HDRGGGAQMF NDVFGGPPKY GESRGGNTTS SSASFDYDSI FKDKSAKSSL PVFDKPVYDD  120
DIFDGLPGLK SSSSASSAAK FDDVFATVGS ASPPKPKSMN SSAFDDLLGN LGKKGAESRR  180
EAPKVEKDSP AFDDLLPGFG RSNSPSVSRY KYRKMGWIFT NLSCSAFDNT GREFLYRSAS  240
ESSRATKPTT SSVKTAPNTI DDPFVVLEST SAPATAPSSE SFPDPLDEIG RFNSSGSTNI  300
DSSHVPRGSF DDLDPLDNLS KSVPLASSKV NERGKERSPL RSGASMAGTF SPPNQDPVDK  360
YPVENSGKYS QHNQPVDDFQ ETPFGMAPGP RVTSKPATAP QSYINVSAND TFSSPVSEEV  420
SESADEIWLT VSEIPLFTKP TSAPPPSRPP PPRPPRMSAR KRFNEQSFSN SRSPSSAQAP  480
RSSVSQFDEL DDFATGRRTQ TNANDGADSF AGEEGDTDSS AAAAASAAAM KDAMDKAEAK  540
IRHMRERDYM KASRSKESTQ VDRDVLEAEQ RQLRERQERL DRERQQSQRE AEEREQIRLR  600
DLERDREQKE RDQKSQERER ERVERERARQ AVERANREAR ERAAADARVR AERAAAGKAS  660
AEARERAERA AVQRAQAEAR ERAAAEAKER AERAAAEARE RANAGAREKE RDARARADRA  720
ATERAAAEAR DRAAAAARAN QQKYEAQPKN ENDLESFFSS RPSSAPRPRA TNPDPFFDTA  780
NKGAPEAPKS TSVGSTSNMR KASSATNIVD DLSSIFGAAG TGQSGDFQDI AGETVERRRA  840
RLERHQRTQE RAAKALAEKN QRDLNAQMEQ EERHRIAETL DFEIKRWSAG KEGNLRALLS  900
TLQYVLWPES GWQPVSLTDL ITAASVKKVY RKATLCIHPD KVQQKGANLQ QKYIAEKVFD  960
MLKVCLWKSN WKVRIIAGRE SAVGAMGLKR KSPHQLEALR EFFANEEYPT NSDMEGLAEL  1020
LDLTLCQVRV WFVEKRRREK RKIRTSTPLQ SKKQCLAGEG NHTVIASSAG KVLTQQRASS  1080
RDISKSSSSL SSEVENGISE RSLARVQKLL PSEYILSKIF RKDGPSLGVE FDSVPSRGFH  1140
AVEDSRKSIS GSEDDETAEE KRKHVWDCTL SMVKKHGMGK GVMTKNDTDN RIGVSTVKHG  1200
IGKGLMTKVS KLKFSMNDAI VLLHPKPKHN FGYHCFAHHD RVQDYSASAC MEKHGMGKGL  1260
MTARQAINPN GGDVSTDIQF SDGRNTSTPE IPTPDSSKLR YQKRKRQSVM TKVGDKLKDK  1320
QKASFKTREA RSKSKETEKQ HFREKCELAL DGRITQESLA EVELLMDDEE VEMRQLHAGP  1380
NPLSCSEHCS DNGLRSCPLC KDLLPKFPPV SVNMKQPFDV QPWESSSEAV KKFFKVLHFL  1440
YTYSVTTKIC SFTLDAFAQA FHDKDSLLLG EIHVALLKLL LCDVETEMRN EFLPHLTISC  1500
KFLALLHSVE GQELLVDFWK SSLNPLTWTE ILRQVLVAAG LGSKQGASRR QALSKEMRIM  1560
LKYGLTPGTL KGKLFRLMFQ KGNHGIKVSE LAKSTEVIEL NLANTTEERE LLISSTLSSD  1620
ITLFEKISLS AYRLRVSSLL KEDDTFQSDS EDSGSIHDDF NDAGMCSSSD SECETESSSQ  1680
RKLIPLKCHK SKSNMFKIHN EIDESNPGEA WLLGLMDGEY SDLSIEEKIN LLVALVDLVS  1740
AGSSIRAEVM LIALDPVRPA FGTAPNLQRY GSGGKIKRSS LHRPSWVHGK PIFDPNITSS  1800
LSKSQPVDSS VSICKLNPED KSSGTGTDAK EIEAGACLHH MQSVFLGSDR RYNRYWLFLG  1860
PCDFHDPGHK RVYFESSEDG NWKVVDTAEA LRSLLSVLDN RGRREAHLIE SLEKRENFLC  1920
QEMSTVLVND AVSRHSSQPI QSELTVREDS SSPVSDVENN LSLTETTNDS LPRCSAIVLD  1980
AERNMEEQNL RRTRLQQFDA WIWGHFYCGL NAVKHNKRSY FESLSRCQAC HDLYWRDEKH  2040
CRICHSTFEV DFDLEEKYAV HTATCRLKAE NGKLSQYKVL PTVLQTLKAG IHAIESVMPE  2100
GALVGAWTKS AHRLWVKRLR RTSSLAELLQ VVTDFVAAIN EDWLRQYNDA PGFNPFAEAI  2160
AACFSNQWPF GIQKAKLCCS GKPFAVLRKG VVCLLLRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ag7_A5e-29878963994Putative uncharacterized protein F9E10.5
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
110351041RRREKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. May prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing. {ECO:0000250|UniProtKB:F4HY56}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10012302
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015578098.10.0homeobox-DDT domain protein RLT3 isoform X1
RefseqXP_015578099.10.0homeobox-DDT domain protein RLT3 isoform X1
RefseqXP_015578100.10.0homeobox-DDT domain protein RLT3 isoform X2
RefseqXP_015578101.10.0homeobox-DDT domain protein RLT3 isoform X3
SwissprotF4JRF50.0RLT3_ARATH; Homeobox-DDT domain protein RLT3
TrEMBLA0A1Q3BK610.0A0A1Q3BK61_CEPFO; Homeobox domain-containing protein/DDT domain-containing protein
STRINGLus100123020.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61181519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12750.10.0Homeodomain-like transcriptional regulator