PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10012257
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Nin-like
Protein Properties Length: 874aa    MW: 96288 Da    PI: 5.3363
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10012257genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK901.9e-28552603152
       RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                  aek+i+l++l+++F++++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rk+k++
  Lus10012257 552 AEKKITLDVLRQHFAGSLKDAAKSLGVCPTTLKRICRQHGISRWPSRKLKKV 603
                  589***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.314540623IPR003035RWP-RK domain
PfamPF020423.2E-26555603IPR003035RWP-RK domain
SuperFamilySSF542775.64E-23778867No hitNo description
SMARTSM006661.6E-29785868IPR000270PB1 domain
PROSITE profilePS5174528.066785868IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2401.7E-22785865No hitNo description
CDDcd064075.67E-40787866No hitNo description
PfamPF005642.1E-21787867IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 874 aa     Download sequence    Send to blast
MDGSSWQSGM LLGSLADTSM DFDYMDELLL DGCWLETTDG SDFFNPAPSD QFTATFHPST  60
VLSPAVDINN VDMSAGTSQR NTEEESKQMS VFDKAGVSGR ENDDDTAEGS GLSQRWWIGP  120
KSNPIPGSTV KDRLVGAIGS IRDLIKDKDA LIQIWVPTDS RMGRRVLTTF DQPFAVDGSS  180
QRLANYRDIS INYQFPAEEG GDSKDFAGMP GRVFLGKVPE WTPDVRFFRN DEYPRVDHAR  240
QYNVCGTLAV PVFEQRSKVC LGVIEIVTTR QEVKYQSELE KISKALEAVD LRSSETPSTQ  300
SMKSRDIAYQ DALPEIQQVL KSACETHNLP LAQTWVPCIQ QGKGGSRHSD ENYFHCVSTV  360
DQACFVSDPQ IKGFHEACSE HHLLKGQGVA GRAFTTNEPC FSSDITLYSK TEYPLSHHAR  420
MFGLCAAVAI RLRSVHTGAA DFVLEFFLPA DCRTPEEQEK MLNSLSVIIQ HVCQTLRVVT  480
DKELEEEADS VVFPSVDLTD VITVPSAEKG MELLETSPDD KKRSIEIDGE FSVGGFSSTI  540
EGKQVDRKRT KAEKKITLDV LRQHFAGSLK DAAKSLGVCP TTLKRICRQH GISRWPSRKL  600
KKVGHSLQKL QVVMDSVQGA SGALHIHSFY TNFPELGSPQ GSKSCSPLPV SKLDHNPEEP  660
SATLLNATVK STSSSSCSQG SSSSHSLSSG SQQQQQSATE FAVLGEESEH KPLVDQSATN  720
GLVKRVRSEA ELRISGEVEA AAAKVTLPRA QSHQSLADEQ ANLGNRIHQL AKSGTQVPKW  780
NAADAQRVKV AYGNEIVRFR MSKNWGFTDL LLEISRRFGI EDISRFDVKY LDDDSEWVLL  840
TCDEDVEECV EVCRGSQSQT IKLLLQVSSR CLS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00154DAPTransfer from AT1G20640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10012257
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021675145.10.0protein NLP4-like
SwissprotQ9LE380.0NLP4_ARATH; Protein NLP4
TrEMBLA0A2C9VVT20.0A0A2C9VVT2_MANES; Uncharacterized protein
STRINGLus100122570.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12373399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76350.10.0Nin-like family protein