PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10012239
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family G2-like
Protein Properties Length: 328aa    MW: 36528.8 Da    PI: 7.6844
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10012239genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.55.6e-3276129255
      G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  prlrWtpeLH++Fv+ave+LGG+e+AtPk +l+lm+v+gL+++hvkSHLQ+YR+
  Lus10012239  76 PRLRWTPELHHSFVKAVERLGGQERATPKLVLQLMNVHGLSIAHVKSHLQMYRS 129
                  8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.79172132IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.9E-3072130IPR009057Homeodomain-like
SuperFamilySSF466893.58E-1575131IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-2276131IPR006447Myb domain, plants
PfamPF002491.3E-977128IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MQELISHGGI STGSCGGGKT STNEEEDELP GAGPGSCSSN STVEEEDDDD EDEEGKVGKS  60
KTTSSSVRPY VRSKLPRLRW TPELHHSFVK AVERLGGQER ATPKLVLQLM NVHGLSIAHV  120
KSHLQMYRSK KTDDPNRVIS EQHRHLLESG DRNIFNLSQL PMLQGFNTTL RRHYPIYNVN  180
KPHFNDDINQ RRFLQSRLTG PPPVPDRNIN GTSSWKYFST TTTNIINSNF QPATTTSFIT  240
SGAHLKRKAA TSDDDDHKLD LELSLKLKQP KCGEKNDVVS MEESRRPPEV GRLLESELSL  300
SLCSPSSCDR VNKKEHGKRT STLDLTI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-1977131458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-1977131458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-1977131357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-1977131357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-1977131357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-1977131357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-1977131458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-1977131458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-1977131458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-1977131458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-1977131458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-1977131458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10012239
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021677557.16e-61putative Myb family transcription factor At1g14600
RefseqXP_021677558.16e-61putative Myb family transcription factor At1g14600
TrEMBLB9T7P61e-58B9T7P6_RICCO; Uncharacterized protein (Fragment)
STRINGLus100122390.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23783482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.13e-46G2-like family protein