PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10012196
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 282aa    MW: 31116.4 Da    PI: 8.6643
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10012196genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00065216238223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                  +Cp Cg  F +  +L+ H ++ H
  Lus10012196 216 VCPQCGSKFASVTSLVEHVQKvH 238
                  6******************9988 PP
2zf-C2H218.65e-06253275223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                  +Cp+C+k F+++ +L+ H  + H
  Lus10012196 253 VCPKCSKGFRDPVDLVAHVERdH 275
                  7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183101.16E-13650No hitNo description
PROSITE profilePS510397.8031056IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.9E-111052IPR000058Zinc finger, AN1-type
PfamPF014284.8E-141351IPR000058Zinc finger, AN1-type
SMARTSM001541.1E-61352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.108.0E-1190144IPR000058Zinc finger, AN1-type
SuperFamilySSF1183107.06E-993143No hitNo description
PROSITE profilePS510397.86698146IPR000058Zinc finger, AN1-type
PfamPF014282.9E-8101141IPR000058Zinc finger, AN1-type
SMARTSM001540.05101142IPR000058Zinc finger, AN1-type
PROSITE profilePS5015710.18215243IPR007087Zinc finger, C2H2
SMARTSM003550.0099215238IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.94E-5216271No hitNo description
PROSITE patternPS000280217238IPR007087Zinc finger, C2H2
PROSITE profilePS501578.85252280IPR007087Zinc finger, C2H2
SMARTSM003558.4252275IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280254275IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGTPAFPDLG KHCFVEDCKQ LDFLPFTCDR CRQVFCLQHR SYIKHNCPTA DKNDVTVVVC  60
PLCAKGVRLI GNEDPNISWE THVNTECDPS NYEKVTKKPK CPVKGCRESL TFSNTIKCRD  120
CTKDHCLKHR FGLDHSCPGP KKPDPGFQFM SLLNRSNTQN TKTKRPSTST SRSWTSNFFS  180
AAEAGVSKLS RDLSQVWQTT PGIVGASSSR GGGDEVCPQC GSKFASVTSL VEHVQKVHEK  240
KQQSRVLKLP VDVCPKCSKG FRDPVDLVAH VERDHGGTSK A*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10012196
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8308790.0EU830879.1 Linum usitatissimum clone LU0018C06 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021662458.11e-152zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
SwissprotQ8VZ421e-123SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLA0A2C9V9C91e-149A0A2C9V9C9_MANES; Uncharacterized protein
STRINGLus100121960.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58643351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-122C2H2 family protein