PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10012092 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | MYB_related | ||||||||
Protein Properties | Length: 257aa MW: 28041.1 Da PI: 9.1075 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.2 | 2.8e-11 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 ++rWT+eE+ l+ +++++G+g W+tI R+ ++k++w++ Lus10012092 5 KQRWTAEEEAALKAGIRKHGTGKWRTILMDPDfgpvlRIRSNVDLKDKWRNI 56 79***************************99999**999***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.195 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.09E-14 | 2 | 59 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-6 | 4 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.3E-7 | 5 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-12 | 5 | 56 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 8.57E-20 | 6 | 57 | No hit | No description |
SMART | SM00526 | 1.6E-14 | 86 | 151 | IPR005818 | Linker histone H1/H5, domain H15 |
PROSITE profile | PS51504 | 23.402 | 88 | 156 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 1.25E-13 | 89 | 163 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 9.7E-13 | 90 | 159 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 3.5E-8 | 90 | 149 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MRGPKQRWTA EEEAALKAGI RKHGTGKWRT ILMDPDFGPV LRIRSNVDLK DKWRNIKVMA 60 IWGSRHKAKL ALNTTPHNPE LEQSLNDLLP KLDSLIVEAI STLKEPEGSD EASIATYIED 120 KQCGVPNLRK LLARKLKLLT ATGKLIKVKQ QYRISPGSTA SEGTNGSPFL VVDGKQNTSN 180 VDKNSSKIQS MFHVEQELHR IQGMTAAEAA AVAVKAIAEA ELAIAEAEEA ARKAESAEAE 240 AEACHVFAEA AVQAFR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10012092 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021633738.1 | 1e-80 | telomere repeat-binding factor 2 | ||||
Refseq | XP_021633739.1 | 1e-80 | telomere repeat-binding factor 2 | ||||
Swissprot | Q9FJW5 | 4e-55 | TRB2_ARATH; Telomere repeat-binding factor 2 | ||||
TrEMBL | A0A251JI53 | 3e-79 | A0A251JI53_MANES; Uncharacterized protein | ||||
STRING | Lus10012092 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1453 | 33 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67580.2 | 2e-48 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10012092 |
Publications ? help Back to Top | |||
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