PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10012045 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | B3 | ||||||||
Protein Properties | Length: 222aa MW: 25485.5 Da PI: 9.8227 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31.8 | 2.5e-10 | 11 | 92 | 1 | 83 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFk 83 ffkv +p+ + ++lp++f+++++ + ++ +ltle +g++W+v l +++++r++l +G +F + ++ +++++ Lus10012045 11 FFKVILPETIQDKE-MMLPRRFMKNFKAE-FSGSELTLEVADGKTWTVGLEAeEGYRNRVWLVSGFDDFLRHHEPSRLKVCILR 92 78888777777766.********777544.56669***************88899999************99987777777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.04E-10 | 6 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.5E-11 | 10 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.00E-10 | 11 | 92 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MSAANIPFLQ FFKVILPETI QDKEMMLPRR FMKNFKAEFS GSELTLEVAD GKTWTVGLEA 60 EEGYRNRVWL VSGFDDFLRH HEPSRLKVCI LRSTSMEITY PPLAPAPDSS ELWERLKKTK 120 NMILSCRFQY WTLEAMSANT KRAIQRAVEE KNPADISTMV ILMADHISPG TMRLPTKFTK 180 KFCSGNSDKV TLQLYEDGAN RVVRTWPAYL IVRSNQRQVA R* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10012045 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10012045 | 1e-166 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 5e-09 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10012045 |