PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10012040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | B3 | ||||||||
Protein Properties | Length: 228aa MW: 25212.2 Da PI: 8.9746 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.8 | 2.9e-11 | 52 | 139 | 11 | 98 |
HHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 11 lksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + +++ lp kfa++h +k+ + +l ++g ++e ++ k + ++++GW++F ++n +ke+ ++ F+++g+s+f ++++f+ Lus10012040 52 GDERCKPLPIKFATKHgrklAMKEWS--NAKLCLPNGTVFEAGITAGKDHNDLWFKTGWSKFMDDNSIKEKFVLAFEYVGESRF--NIRIFD 139 55556789********9976555555..57788889********99999999****************************9999..888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF69103 | 7.72E-9 | 8 | 60 | IPR006789 | Actin-related protein 2/3 complex subunit 5 |
Gene3D | G3DSA:1.25.40.190 | 2.9E-5 | 11 | 58 | IPR006789 | Actin-related protein 2/3 complex subunit 5 |
Pfam | PF02362 | 3.1E-9 | 49 | 139 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.10E-11 | 59 | 139 | No hit | No description |
SuperFamily | SSF101936 | 1.67E-11 | 59 | 141 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.1E-12 | 59 | 141 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0034314 | Biological Process | Arp2/3 complex-mediated actin nucleation | ||||
GO:0005885 | Cellular Component | Arp2/3 protein complex | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MAGADGFVEA ENAEAIITRI EHKSRKIESL LKQYKPVEAL KTALEGSPPK TGDERCKPLP 60 IKFATKHGRK LAMKEWSNAK LCLPNGTVFE AGITAGKDHN DLWFKTGWSK FMDDNSIKEK 120 FVLAFEYVGE SRFNIRIFDL SMSKILYTPQ PPAVVAGECE ALLDELAARG IHVANKFSCM 180 TFPIISSESK RAMQEAMKNK REDDAVPSFI VVMNPCGGKN SKRPTAL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10012040 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10012040 | 1e-169 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 5e-13 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10012040 |