PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10012039
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 280aa    MW: 32050 Da    PI: 7.4156
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10012039genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.24.5e-1111105197
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  ffkv +p+    +  ++lp++f+++++ +  +s +l+le  +gr+W+v l   +++++r++l +G ++F +   +  + +++F++ + s+   +v ++
  Lus10012039  11 FFKVILPKTIQDKE-MMLPRRFMKNFKDEFSGSDELKLEVADGRTWTVGLEAeEGYPNRVWLVSGFEDFLRFYSISLKQILLFRYLEPSRL--KVFIL 105
                  77888776666665.********99987888999****************88899*****************************8764444..55555 PP
2B337.54.2e-12174272596
                  -..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS......-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-..SSSEE. CS
           B3   5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg......rsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkld..grsefe 91 
                   + s++ + g ++lp kf++++  g + e+  tl+l  e        r+W v +  +k  g+ + + +GW++F +an++ egD++vF+l+  ++s+++
  Lus10012039 174 VIASYHISPGFMRLPTKFTNKFclGDSDEG--TLQLSEEGAdpdrvvRTWWVVF--NKVVGMNLRQmSGWSQFRSANKIVEGDVCVFELIppSDSDAK 267
                  678999999**********99997544333..7887776669999*********..888888443359********************8764445555 PP

                  .EEEE CS
           B3  92 lvvkv 96 
                   v+kv
  Lus10012039 268 TVLKV 272
                  44444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-157107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.67110108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.1E-1610108IPR015300DNA-binding pseudobarrel domain
PfamPF023624.9E-811104IPR003340B3 DNA binding domain
SMARTSM010192.0E-511109IPR003340B3 DNA binding domain
CDDcd100176.45E-1111106No hitNo description
SuperFamilySSF1019362.35E-12164276IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-11167276IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.898170278IPR003340B3 DNA binding domain
SMARTSM010190.024171278IPR003340B3 DNA binding domain
PfamPF023624.8E-10173272IPR003340B3 DNA binding domain
CDDcd100171.56E-10173276No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MSAANFPFLQ FFKVILPKTI QDKEMMLPRR FMKNFKDEFS GSDELKLEVA DGRTWTVGLE  60
AEEGYPNRVW LVSGFEDFLR FYSISLKQIL LFRYLEPSRL KVFILRSTSM EITYPPLAPA  120
PDSSELLERL KKMENMVQSN KFHLVFDTVS TNSKRAIERA LEEMNPANIS TLVVIASYHI  180
SPGFMRLPTK FTNKFCLGDS DEGTLQLSEE GADPDRVVRT WWVVFNKVVG MNLRQMSGWS  240
QFRSANKIVE GDVCVFELIP PSDSDAKTVL KVRVFRTAD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10012039
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100120390.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-16B3 family protein