PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10012038
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 361aa    MW: 39806.9 Da    PI: 9.9835
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10012038genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.83.4e-1291182698
                  ..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   6 tpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  t++ v +s+   lp kfa+++     +kk +    +l  ++g ++e  ++  k +++ ++++GW++F ++n +k+  f++F+++g s+f  +v+vf+
  Lus10012038  91 TTPTVAESH-TPLPIKFARKYgrklAMKKWS--NAQLCIPNGTVFETGITAGKDRKELWFKRGWSKFMDDNSIKQDFFLTFEYTGGSRF--NVGVFD 182
                  556677776.889********9977555555..68888999********99999999***************************98999..999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.65685184IPR003340B3 DNA binding domain
SMARTSM010190.006390184IPR003340B3 DNA binding domain
PfamPF023621.4E-993182IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-1394186IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.3E-1394185IPR015300DNA-binding pseudobarrel domain
CDDcd100171.49E-10102182No hitNo description
SuperFamilySSF1019364.9E-5247331IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.4E-6247333IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MRVILPHVLQ AKKMVMPQNF VGLCGSKLLS TAELFLPNGA VWTVGVAKRR NATGVGNEAY  60
FGEKWADTPF APDSSSDSTT LGIPSSPSRS TTPTVAESHT PLPIKFARKY GRKLAMKKWS  120
NAQLCIPNGT VFETGITAGK DRKELWFKRG WSKFMDDNSI KQDFFLTFEY TGGSRFNVGV  180
FDLSTCEIVY PPPPSPAVVS EDECEALLAE LAARGIEVAS KFNCLTFPKM SPESKTALRE  240
AMANKGRDTP SFIVVMMPAN QQLRTTYRIT VPAGIVQKLK MKYEDRMNLK VSGGGGSGGI  300
EIELKHSGPS LTMMGKKWTK FYHANQLRKG TSAFSRLSSP PPAMEDLRSW FPYLEFDRVC  360
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10012038
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100120380.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-12B3 family protein