PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10012030
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 1199aa    MW: 132772 Da    PI: 5.1776
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10012030genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.21.2e-2682140159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDg +WrKY qK+vk s++prsYY+C++agC+v k v+r+++dp +v++tY+geHnh+
  Lus10012030  82 LDDGVQWRKYDQKHVKRSPHPRSYYQCAYAGCTVVKSVQRDSDDPAFVITTYKGEHNHD 140
                  58********************************************************7 PP
2WRKY85.93.6e-27229286259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dgy+WrKY qK++kg+ +prsYYrCt+ gC++kk+ver+ ++p++v++ Y+g Hnh+
  Lus10012030 229 NDGYHWRKYHQKVIKGNAYPRSYYRCTYVGCSAKKHVERDLDNPDYVITSYKGIHNHD 286
                  7********************************************************6 PP
3WRKY75.37.2e-24390448159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +dDgy+WrKYGqK v gs + r+YY+Ct + Cp++k v r+++dp++v+++ +++H h 
  Lus10012030 390 VDDGYRWRKYGQKAVSGSAYWRGYYKCTRTACPARKTVYRDSDDPEFVITKVQNDHSHA 448
                  59*******************************************************96 PP
4SBP37.75.2e-1299310292864
                   HT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-ST CS
          SBP   28 skapvvlvsgleqrfCqqCsrfhelsefDeekrsCrr 64  
                    k  ++lv +++qrfCqqCs++h l efDe+  +C r
  Lus10012030  993 EKDGSTLVGKVMQRFCQQCSKYHVLGEFDEKESTCLR 1029
                   577788999***********************99965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.9E-2969141IPR003657WRKY domain
SuperFamilySSF1182902.48E-2474141IPR003657WRKY domain
PROSITE profilePS5081127.92177142IPR003657WRKY domain
SMARTSM007748.7E-2982141IPR003657WRKY domain
PfamPF031064.1E-2283140IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-24221286IPR003657WRKY domain
SuperFamilySSF1182901.96E-23226287IPR003657WRKY domain
SMARTSM007741.0E-29228287IPR003657WRKY domain
PROSITE profilePS5081126.911229288IPR003657WRKY domain
PfamPF031063.5E-21229286IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-24376449IPR003657WRKY domain
SuperFamilySSF1182908.89E-21383448IPR003657WRKY domain
PROSITE profilePS5081125.189385450IPR003657WRKY domain
SMARTSM007742.2E-23390449IPR003657WRKY domain
PfamPF031061.5E-18391447IPR003657WRKY domain
SuperFamilySSF520584.2E-27634807IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.106.8E-22647799IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS5114110.3579611041IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.72E-109901030IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.101.1E-89941027IPR004333Transcription factor, SBP-box
PfamPF031101.3E-79991030IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1199 aa     Download sequence    Send to blast
MADSAVLGLL NEDDVEDVED FGFPSARVDS TGHGVLQEKE DDDDDGTLAG SRRYFINTMS  60
VVSRKAGKSD VSFRTKSEVD VLDDGVQWRK YDQKHVKRSP HPRSYYQCAY AGCTVVKSVQ  120
RDSDDPAFVI TTYKGEHNHD VVTPSAKILD HHGTTGPPTT GDSFSTGSNY SGISSLDNSG  180
VRNLLSDSSR IVSTTSGSAI EEEEHGNNVL FPSLYREKDI TSQTKVKDND GYHWRKYHQK  240
VIKGNAYPRS YYRCTYVGCS AKKHVERDLD NPDYVITSYK GIHNHDFAIP RAKCISHVPL  300
EPLTIVDSSC EKKIKTIGDT LCTGSDNSGL TSVDLRGAEN RRSDSSRIGS SKGDSIVEEE  360
GHGNNDKFRK CKREKRKVIT LRTKSKVDLV DDGYRWRKYG QKAVSGSAYW RGYYKCTRTA  420
CPARKTVYRD SDDPEFVITK VQNDHSHAAV NAPDAAVRPA FSLGGEYETS SFMSLDLGIG  480
KSSTAETRHE GNVNVMKTDD IKFGVEFSAN DGCSSFDNPF TESGYWNNDE SMLWSPFETG  540
FDYIGTAPII DYGVETSVAE KPMPQPPSSY SLRSGSAESG AIILDLGVGL SSSAETTCNG  600
RQEAEKVEGR STLAVAESKW LQFQKRDIYM EEVYLSRSPS PSYLCAHNLK SIFLPRCEVE  660
HLWNGGEQLL VNLKSLDVNH SGLLQIPDLS KAQKLESLIL EGCLNLVSVS SVHHLANLQN  720
LNLKRCRSLK GLPSLVKLKL LKTLNLSHCS NLRRLPPSLG CLSSLCELNL RNCAKLDYLP  780
QGVVKLMRSL ETLNVSGCSS LWKSIGADDN AALSFPLENL PSTSRISMNH SFEDVNLEPQ  840
PVETVQVDAA GKCASIEDSP PQELPLDLSD IWRKKPLESD DVAAFMTTPL IDLLPSGSRI  900
REWLLPNMDS SSNACSSPPE DTAFHARNSI RNEGSDDEKG MMEAVREKDD QQQLVGNVKH  960
EDDPESVGKS PQIVGSEFVC HQVEDYDVNP RSEKDGSTLV GKVMQRFCQQ CSKYHVLGEF  1020
DEKESTCLRN KRPNECSIDT AESEEKHMVV LKRTRTSYDD TGRTDLALHS LELFEEYLTM  1080
SLKDLENANA LSNIESALCA MIEHYSSSSS NLYDKATVES MLAELKQSVV EPVSSMQKAK  1140
SESAVVAGKM TELDTDLGHG QLHLSLLDAE MSLILEEEEN IEAEIQRLME KKGEFLLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-2272447776Probable WRKY transcription factor 4
2lex_A8e-2272447776Probable WRKY transcription factor 4
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10012030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100120300.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.17e-37WRKY DNA-binding protein 3