PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10012027
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 950aa    MW: 105312 Da    PI: 6.2779
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10012027genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.56.7e-2985142158
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                  ldDg++WrKYGqK +kgs +prsYYrCt+ gC+++k++er++ +p++v++tYeg Hnh
  Lus10012027  85 LDDGHHWRKYGQKLIKGSSHPRSYYRCTYVGCSTRKHLERDSMNPEFVKTTYEGIHNH 142
                  58******************************************************** PP

2WRKY38.22.8e-122002412159
                  -EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY  21 prsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                   rsYYrC ++   gC+++k++er+ +dp++ ++tY g Hnh+
  Lus10012027 200 VRSYYRCCFKysgGCKATKQMERDPDDPEFYITTYLGFHNHD 241
                  7*******999999***************************7 PP

3WRKY30.57.4e-103964312358
                  EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
         WRKY  23 sYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                   YY+Ct+agCp+ k ++r+++dp++v+++  + H+h
  Lus10012027 396 CYYKCTHAGCPAIKTMQRDSDDPEFVITKVLNAHRH 431
                  5*********************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.7E-2975144IPR003657WRKY domain
SuperFamilySSF1182903.14E-2578144IPR003657WRKY domain
PROSITE profilePS5081128.95480145IPR003657WRKY domain
SMARTSM007744.0E-3285144IPR003657WRKY domain
PfamPF031067.4E-2386142IPR003657WRKY domain
SMARTSM007746.9E-8188242IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.5E-11199242IPR003657WRKY domain
PfamPF031063.5E-10200241IPR003657WRKY domain
SuperFamilySSF1182903.92E-10200241IPR003657WRKY domain
PROSITE profilePS5081115.571201243IPR003657WRKY domain
SMARTSM007742.5E-5385433IPR003657WRKY domain
SuperFamilySSF1182906.54E-8395432IPR003657WRKY domain
PfamPF031062.4E-6396431IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.3E-8396432IPR003657WRKY domain
PROSITE profilePS5081111.026397431IPR003657WRKY domain
PfamPF169871.1E-13451524IPR003101Coactivator CBP, KIX domain
SuperFamilySSF520587.91E-24668835IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.106.0E-19673827IPR032675Leucine-rich repeat domain, L domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003712Molecular Functiontranscription cofactor activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 950 aa     Download sequence    Send to blast
MSNPADAPEE LSLPWDFMDG DFVPQEDDDR LGFPFGAVWP NSNLLQQGDD DALAESDGKL  60
RYSDNTAAGN PKLASFETKS EVDVLDDGHH WRKYGQKLIK GSSHPRSYYR CTYVGCSTRK  120
HLERDSMNPE FVKTTYEGIH NHGVVTPGEK AISHSTTRPC SSDDPGNESD NRFTTKLDCE  180
SGSNLMSKSL KIGSYHLRSV RSYYRCCFKY SGGCKATKQM ERDPDDPEFY ITTYLGFHNH  240
DAVLPKPEAA RHGTTGPVTI GDSFSIASEN SGITSLDQGG EGNFLNDLSR ITLQRSDSTL  300
EEEGHDNNGK FPRAKCINHV AVEPLTVGDS FERKTKTIGD SLCTGSDTSG ITSLDLRGAE  360
NRRSDSLQIG SSKGDSIIEE EGHSNNDKFR KFKRWCYYKC THAGCPAIKT MQRDSDDPEF  420
VITKVLNAHR HGDVATTKRQ SNSLDTAKES GDWEAPLMGE TRQTALFKIM RSLNGNMYSC  480
NKKGLEELKE IAVQLEEKNY SAAHDHDDYL RKIVLELDKL ENKDASILLP PIPVGIDTKP  540
LHPGVQNAHS NDAAKPISGS LRIGSDDRNK SSVLDVKGAI FVNDDSISRS GCCSWSGGSG  600
KKHASIFDHQ VGMSSFAENR RNGKLLSLDS PLVSYLQKQQ EAKMDSKKWF IYQSSIYMEE  660
LHLSKSPTSY FCAQIFTSMF LPYCNVQQLW NGGEQQLLVN LNCLDLKHSS LVRIPDLSKA  720
QKLESLNLQG CVNLVSVSSI QHLTNLQNLN LKRCRNLKGL PSLVKLKLLK TLNLSHCSNL  780
RRLPPSLGFL STLCELNLRN CVKLDILPRS VVKLMRSLEM LNVSGCSSLW KSIEDTALPL  840
EHLPTSSESS IFMNQSNRDA SLEPQLTQEP VQVDPVVDSP SQELPLDLSN IWRKNSVESD  900
DVKAFMATPL IDFLPSGARI KELLAPNTDC YSNPCSSSSE DVDSPAQSE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-2469142174Probable WRKY transcription factor 4
2lex_A2e-2469142174Probable WRKY transcription factor 4
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10012027
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100120270.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.24e-26WRKY DNA-binding protein 26