PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10012027 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | WRKY | ||||||||
Protein Properties | Length: 950aa MW: 105312 Da PI: 6.2779 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 91.5 | 6.7e-29 | 85 | 142 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 ldDg++WrKYGqK +kgs +prsYYrCt+ gC+++k++er++ +p++v++tYeg Hnh Lus10012027 85 LDDGHHWRKYGQKLIKGSSHPRSYYRCTYVGCSTRKHLERDSMNPEFVKTTYEGIHNH 142 58******************************************************** PP | |||||||
2 | WRKY | 38.2 | 2.8e-12 | 200 | 241 | 21 | 59 |
-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 21 prsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 rsYYrC ++ gC+++k++er+ +dp++ ++tY g Hnh+ Lus10012027 200 VRSYYRCCFKysgGCKATKQMERDPDDPEFYITTYLGFHNHD 241 7*******999999***************************7 PP | |||||||
3 | WRKY | 30.5 | 7.4e-10 | 396 | 431 | 23 | 58 |
EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 23 sYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 YY+Ct+agCp+ k ++r+++dp++v+++ + H+h Lus10012027 396 CYYKCTHAGCPAIKTMQRDSDDPEFVITKVLNAHRH 431 5*********************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.7E-29 | 75 | 144 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-25 | 78 | 144 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.954 | 80 | 145 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.0E-32 | 85 | 144 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.4E-23 | 86 | 142 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.9E-8 | 188 | 242 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.5E-11 | 199 | 242 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.5E-10 | 200 | 241 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.92E-10 | 200 | 241 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 15.571 | 201 | 243 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.5E-5 | 385 | 433 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.54E-8 | 395 | 432 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.4E-6 | 396 | 431 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 7.3E-8 | 396 | 432 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 11.026 | 397 | 431 | IPR003657 | WRKY domain |
Pfam | PF16987 | 1.1E-13 | 451 | 524 | IPR003101 | Coactivator CBP, KIX domain |
SuperFamily | SSF52058 | 7.91E-24 | 668 | 835 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 6.0E-19 | 673 | 827 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003712 | Molecular Function | transcription cofactor activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 950 aa Download sequence Send to blast |
MSNPADAPEE LSLPWDFMDG DFVPQEDDDR LGFPFGAVWP NSNLLQQGDD DALAESDGKL 60 RYSDNTAAGN PKLASFETKS EVDVLDDGHH WRKYGQKLIK GSSHPRSYYR CTYVGCSTRK 120 HLERDSMNPE FVKTTYEGIH NHGVVTPGEK AISHSTTRPC SSDDPGNESD NRFTTKLDCE 180 SGSNLMSKSL KIGSYHLRSV RSYYRCCFKY SGGCKATKQM ERDPDDPEFY ITTYLGFHNH 240 DAVLPKPEAA RHGTTGPVTI GDSFSIASEN SGITSLDQGG EGNFLNDLSR ITLQRSDSTL 300 EEEGHDNNGK FPRAKCINHV AVEPLTVGDS FERKTKTIGD SLCTGSDTSG ITSLDLRGAE 360 NRRSDSLQIG SSKGDSIIEE EGHSNNDKFR KFKRWCYYKC THAGCPAIKT MQRDSDDPEF 420 VITKVLNAHR HGDVATTKRQ SNSLDTAKES GDWEAPLMGE TRQTALFKIM RSLNGNMYSC 480 NKKGLEELKE IAVQLEEKNY SAAHDHDDYL RKIVLELDKL ENKDASILLP PIPVGIDTKP 540 LHPGVQNAHS NDAAKPISGS LRIGSDDRNK SSVLDVKGAI FVNDDSISRS GCCSWSGGSG 600 KKHASIFDHQ VGMSSFAENR RNGKLLSLDS PLVSYLQKQQ EAKMDSKKWF IYQSSIYMEE 660 LHLSKSPTSY FCAQIFTSMF LPYCNVQQLW NGGEQQLLVN LNCLDLKHSS LVRIPDLSKA 720 QKLESLNLQG CVNLVSVSSI QHLTNLQNLN LKRCRNLKGL PSLVKLKLLK TLNLSHCSNL 780 RRLPPSLGFL STLCELNLRN CVKLDILPRS VVKLMRSLEM LNVSGCSSLW KSIEDTALPL 840 EHLPTSSESS IFMNQSNRDA SLEPQLTQEP VQVDPVVDSP SQELPLDLSN IWRKNSVESD 900 DVKAFMATPL IDFLPSGARI KELLAPNTDC YSNPCSSSSE DVDSPAQSE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-24 | 69 | 142 | 1 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 2e-24 | 69 | 142 | 1 | 74 | Probable WRKY transcription factor 4 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10012027 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10012027 | 0.0 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07100.2 | 4e-26 | WRKY DNA-binding protein 26 |
Link Out ? help Back to Top | |
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Phytozome | Lus10012027 |