PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10011730
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family AP2
Protein Properties Length: 393aa    MW: 43988.6 Da    PI: 6.9855
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10011730genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2361.8e-11274330155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+ ++ a++k++g
  Lus10011730 274 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqSRKGRQ-GGYDMEEKAARSYDLAALKYWG 330
                  78*******************87776664446655.77******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.5E-9274330IPR001471AP2/ERF domain
CDDcd000186.95E-19274338No hitNo description
SuperFamilySSF541711.44E-13274340IPR016177DNA-binding domain
SMARTSM003807.0E-21275344IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-12275339IPR001471AP2/ERF domain
PROSITE profilePS5103217.042275338IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MKSMNNDDEN NNNNNNNTNW LGFSLAPDHH NHHFKMADVI PTTTSTTTSA AATMPSSFFN  60
LTTSYATNSS SSPSSHYVHP QNGGASFFSS QMLPLKSDGS LCITQALTTS HPSHDNNTSN  120
NDMMYHMHHQ HQLQQQFYHA YSFNHIEAAA NKELQQIEGD DDDAAIVKSW ISRNYGMVEQ  180
QSNNNNADEI ESAAGGCGSM NAAMVAYGDL QSLSLSMSSG SQSSCVSSVS QISTPLAECG  240
VMVVENKKRG CEKVDQKKQI VHRKSIDTFG QRTSQYRGVT RHRWTGRYEA HLWDNSCKKE  300
GQSRKGRQGG YDMEEKAARS YDLAALKYWG ASTHINFPLE NYHKELDEMK NMSRQEYVAH  360
LRRQELPLPT ITSVVHLRIF ISKLEVPYLQ EK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10011730
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021629464.11e-103AP2-like ethylene-responsive transcription factor ANT isoform X2
TrEMBLA0A2C9UVR41e-101A0A2C9UVR4_MANES; Uncharacterized protein
STRINGLus100117300.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.17e-64AP2 family protein