PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10011693
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family CPP
Protein Properties Length: 605aa    MW: 66874 Da    PI: 8.7821
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10011693genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR461e-14188225341
          TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                   k+CnCk+s+Clk+YCeCfaag +C+  C+C +C+N+ e
  Lus10011693 188 PKQCNCKNSRCLKLYCECFAAGIYCDG-CNCVNCHNNLE 225
                  699************************.********975 PP
2TCR51.22.5e-16270309140
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  k++kgC+Ckks ClkkYCeCf+a+  Cse+C+C dCkN e
  Lus10011693 270 KHNKGCHCKKSGCLKKYCECFQANILCSENCRCMDCKNFE 309
                  589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.5E-17186226IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.767187310IPR005172CRC domain
PfamPF036384.2E-12189223IPR005172CRC domain
SMARTSM011141.0E-19270311IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.4E-12273308IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MEQGETVSDF APKKLARQLD FTAVCRASVN VAVPEHHSQL LQQAFPPPPS PSARQQQQLQ  60
QQQQQQQQSL LPMLQFHLQL QSPPSKRTPK PPRDQSRELV GAGAELRLHL QTPPPPLNQS  120
HSQPLAQPTK VMPQLQARSQ QMSAVYRIPH PVHKLPLPAL LPAKQESPRA HPKVDTEAKD  180
VTVTPNKPKQ CNCKNSRCLK LYCECFAAGI YCDGCNCVNC HNNLESENTR QDAIGIILER  240
NPYAFKPKIA SSPQGYSASE SPGVVRMIGK HNKGCHCKKS GCLKKYCECF QANILCSENC  300
RCMDCKNFEG SKERKAIYYG NSSGSIYVQQ AANAAINGAI GSSGYGIAPS SKKRKSNTMH  360
DNENKDSSLS FSLKFQKENH GNGITSALPE LRLRTTSSPL LGSSNLTYRS PLAGIIQPQH  420
VKEMCSLLVV LSKETGKEIA ASKGKTGKLP KGGKVENSSA SPISERQYSL ALNVNCLDDS  480
FKETTNERER KTDSVASRDK LENGRLPFPE IDLMCHEQEL DFPKSESPTL EPAVCRHETK  540
EAPSSSLDFS EVYVEQERLV LTGFRDFLTR VITCGSIKGS TSDLRIFFTR HACPSSHVWF  600
YILT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-2718531910132Protein lin-54 homolog
5fd3_B3e-2718531910132Protein lin-54 homolog
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10011693
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015573062.11e-170protein tesmin/TSO1-like CXC 7
STRINGLus100116930.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2272824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.12e-93Tesmin/TSO1-like CXC domain-containing protein