PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10011645 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | LBD | ||||||||
Protein Properties | Length: 226aa MW: 24485.7 Da PI: 6.496 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 139.6 | 1.1e-43 | 51 | 150 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++Cvlapyfp +qp+kf ++h++FGasn++k+l++lpee+r da+ss+vyeA ar+rdPvyG++g i++lq+q++ l+a+la+ + Lus10011645 51 PCAACKILRRRCADKCVLAPYFPPSQPAKFSIAHRVFGASNIIKFLQELPEEQRADAVSSMVYEATARIRDPVYGCAGAISHLQHQVNDLQAQLAKSQ 148 7**********************************************************************************************999 PP DUF260 99 ee 100 ++ Lus10011645 149 AQ 150 87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.973 | 50 | 151 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-43 | 51 | 148 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MEFSEAKAAT TTGNSTPSST TTNSSTSPLL PPSPDSTSSP PPPPPVVIVS PCAACKILRR 60 RCADKCVLAP YFPPSQPAKF SIAHRVFGAS NIIKFLQELP EEQRADAVSS MVYEATARIR 120 DPVYGCAGAI SHLQHQVNDL QAQLAKSQAQ VLTMQAHQAH LMAQILCLEM GHHPSPPDTF 180 IVSNDSNSIP TQTYQKQQQH ENFSSCYADD TTQLLMGPLW EPLWT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-41 | 50 | 152 | 10 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-41 | 50 | 152 | 10 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10011645 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021683852.1 | 5e-80 | LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 4e-66 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | G7IKN3 | 2e-77 | G7IKN3_MEDTR; Lateral organ boundaries (LOB) domain protein | ||||
STRING | Lus10011645 | 1e-166 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1303 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-67 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Lus10011645 |