PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10011440
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HD-ZIP
Protein Properties Length: 762aa    MW: 84570.7 Da    PI: 6.7492
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10011440genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.48.9e-2292147156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  r+k +++t++q++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  Lus10011440  92 RKKYHRHTPDQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 147
                  7999************************************************9877 PP
2START205.71.9e-642805012206
                  HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
        START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                  + ++a+qel+k+a+a++p+Wv+s     e++n+de++++f  +++     ++ea+r++g+v+ + ++lv+ ++d++ qW+e+++    ka t +vi++
  Lus10011440 280 VVNQAMQELQKMAKARDPLWVRSFetgrEMLNYDEYMKQFGGGGSkakaANVEASRDCGLVFFEFHRLVNCFMDVN-QWKEMFPwliaKAVTADVICE 376
                  66899*******************9***************555559999***************************.********************* PP

                  T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
        START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
                  g      ga+qlm+ae q+l+p+vp R+ +f+Ry++ql+a+ w ivdvS+d  +++  + s+ +++++pSg++i++ sngh+kv+wveh ++k+  ++
  Lus10011440 377 GdgrtrnGAVQLMFAEVQMLTPMVPtRELYFLRYCKQLSAEEWGIVDVSIDKVEENI-DISLDKCRKRPSGCIIHDQSNGHCKVVWVEHLECKKTAVS 473
                  *******************************************************98.9*************************************** PP

                  HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 179 wllrslvksglaegaktwvatlqrqcek 206
                  +++r +v+sgla+gak+w+++lq qce+
  Lus10011440 474 SMYRTMVNSGLAFGAKHWLSALQLQCER 501
                  **************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.1E-2178143IPR009057Homeodomain-like
SuperFamilySSF466891.38E-1985150IPR009057Homeodomain-like
PROSITE profilePS5007118.15589149IPR001356Homeobox domain
SMARTSM003892.9E-1991153IPR001356Homeobox domain
PfamPF000463.9E-1992147IPR001356Homeobox domain
CDDcd000867.38E-1896147No hitNo description
PROSITE patternPS000270124147IPR017970Homeobox, conserved site
PROSITE profilePS5084833.67270504IPR002913START domain
SuperFamilySSF559616.69E-29273501No hitNo description
CDDcd088756.81E-99274500No hitNo description
SMARTSM002345.5E-56279501IPR002913START domain
PfamPF018521.4E-52280501IPR002913START domain
SuperFamilySSF559611.54E-11544725No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    Send to blast
MSNNHNQAHP ALSLSLAGIF RGTGSTTTHN NAGTAACING DQVEISSENS GAAMTTRRSN  60
LDGVEFDDHD DDEEEEEESN VEDRTKRKKK KRKKYHRHTP DQIREMEALF KESPHPDEKQ  120
RQQLSKQLGL APRQVKFWFQ NRRTQIKALQ ERHENFLLKA EIDKLHDDNK FLRDTIAANA  180
SSSSTSGCLK CGGGDHPPLS VTDDKHLRVE NAKLKAEVEN LRVLVEKHAP LAGTGTATTS  240
SESSDHHQQQ NQERISITTT MSPDFYSRVF GLEKAKVKEV VNQAMQELQK MAKARDPLWV  300
RSFETGREML NYDEYMKQFG GGGSKAKAAN VEASRDCGLV FFEFHRLVNC FMDVNQWKEM  360
FPWLIAKAVT ADVICEGDGR TRNGAVQLMF AEVQMLTPMV PTRELYFLRY CKQLSAEEWG  420
IVDVSIDKVE ENIDISLDKC RKRPSGCIIH DQSNGHCKVV WVEHLECKKT AVSSMYRTMV  480
NSGLAFGAKH WLSALQLQCE RLVFFMATNV PTKDSTGVAM LAGRKSILRL AQRMTSTFCC  540
AIGASSYRTW TKVTSKTGED IRVSSRKNFN DPGEPFGLIL CAVSSVCLPV SPPALFDFLC  600
DEGRRNEWDI MSNGGAVQSI ASLAKGQDRG NAVTLQMIKA DENTTWILQD SCTNAYESMI  660
VYAPVDIPGM KTVLSGCDSS NISILPSGFS ILHNGLDSWP QVITSLEKNE GSGGSLLTMA  720
FQILTSTLPA AKLTVDSVES ASALVSCTLR NIRTSLECEE N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18593KRKKKKRKK
28691RKKKKR
38792KKKKRK
48793KKKKRKK
58993KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10011440
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020207725.10.0homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A151QT100.0A0A151QT10_CAJCA; Homeobox-leucine zipper protein GLABRA 2
STRINGLus100114400.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47143352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]