PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10011307
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 371aa    MW: 40905.8 Da    PI: 6.5936
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10011307genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.45.3e-08214261455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++iN ++  L+el+P +    sk    a +L + +++++ Lq
  Lus10011307 214 SHSLAERARREKINARMKFLQELVPGC----SKITGTALVLDEIINHVQTLQ 261
                  8*************************9....788999999999999999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.09E-8208265No hitNo description
SuperFamilySSF474592.75E-15208279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.405210260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-14210278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-5214261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-6216266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
METLSGAGAR SGPAGNETAV LDFSDDIRHL IISAPNETAS SFTALLELPP NQAMELLHNP  60
SRPGVEQQYR SHHINRQHQL PQQFNAELLT FPTNAALIER AAKFSVFAAE EDMRKSTTAT  120
IDPSHDDDGD DSGANVLRKA VVVKSEPAET ASRLNSLPTV AKNDENRRQG AKRKEQERKV  180
KAYSKKSKCT AKEDSGEKLP YVHVRARRGQ ATDSHSLAER ARREKINARM KFLQELVPGC  240
SKITGTALVL DEIINHVQTL QRQVEVLSMK LAAVNPRIDF NLDAILAADS GSLTDSNFPA  300
IMMPILWPAE VQGSANMQQY QQWSFDATHP EAWGRENDHN FVVTPENSLL SYVSSANSVS  360
LNSNQLKMEL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10011307
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021621235.11e-131transcription factor bHLH48-like
SwissprotQ8VZ028e-95BH048_ARATH; Transcription factor bHLH48
TrEMBLA0A2C9VDG61e-130A0A2C9VDG6_MANES; Uncharacterized protein
STRINGLus100113070.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49852945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.21e-92bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]