PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10011245
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 1332aa    MW: 144001 Da    PI: 7.7333
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10011245genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.24.8e-16332431198
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l++ d +g++W +++++  +++s++yvl+ G     ++  L++gD+v+F++ +  +++lv+
  Lus10011245 332 FEKMLSASDAGRVGRLVLPKKCAETYlpPISQAEGLPLKVHDYTGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMFLQAGDIVTFSRLD-PGGKLVM 427
                  89**************************666778888***************9989999999***9.********************665.7777777 PP

                  EEE- CS
           B3  95 kvfr 98 
                  ++++
  Lus10011245 428 GFRK 431
                  7765 PP
2B350.24.8e-16669768198
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l++ d +g++W +++++  +++s++yvl+ G     ++  L++gD+v+F++ +  +++lv+
  Lus10011245 669 FEKMLSASDAGRVGRLVLPKKCAETYlpPISQAEGLPLKVHDYTGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMFLQAGDIVTFSRLD-PGGKLVM 764
                  89**************************666778888***************9989999999***9.********************665.7777777 PP

                  EEE- CS
           B3  95 kvfr 98 
                  ++++
  Lus10011245 765 GFRK 768
                  7765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS01359059116IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF1019361.7E-18329431IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.9E-27329432IPR015300DNA-binding pseudobarrel domain
CDDcd100177.73E-21330431No hitNo description
SMARTSM010191.3E-17332432IPR003340B3 DNA binding domain
PfamPF023626.7E-13332431IPR003340B3 DNA binding domain
PROSITE profilePS5086310.264332433IPR003340B3 DNA binding domain
SuperFamilySSF1019361.7E-18666768IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.9E-27666769IPR015300DNA-binding pseudobarrel domain
CDDcd100177.73E-21667768No hitNo description
SMARTSM010191.3E-17669769IPR003340B3 DNA binding domain
PROSITE profilePS5086310.264669770IPR003340B3 DNA binding domain
PfamPF023626.7E-13669768IPR003340B3 DNA binding domain
PROSITE profilePS5105010.976911993IPR011124Zinc finger, CW-type
PfamPF074962.2E-5916947IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1332 aa     Download sequence    Send to blast
MTTPSPSPPP PPPPPSAPYL PPPTAPAAPT WAKCFNSVCS EKKSKKAWRL RSGEQAELCE  60
PCFAAYEEGR FCETFHLNDS GWRCCESCRK RVHCGCIVSV SAFTLLDAGG IECVTCARKH  120
AVVTSSNPTW QTAFYYHGYI ADRGKDASVK KLNYLAKSGP VPWRQAPSLF NSSITQTVAH  180
PMFHSEADRL NATEKLSSAS LEKGKPDNSV NGNTKHSSGD KIENGHPGPS NVERQSSSIR  240
EDSSTSQIGF SRTYTSINET KGKEPGCSTI PMPATSLAIV VHNGGGDAPV EPRPRGRPRG  300
KSQLLPRYWP RFTNEELQRI SGKTNAVITP LFEKMLSASD AGRVGRLVLP KKCAETYLPP  360
ISQAEGLPLK VHDYTGKEWV FQFRFWPNNN SRMYVLEGVT PCIQSMFLQA GDIVTFSRLD  420
PGGKLVMGFR KAINVNPPSS EYPAISNAQD TESTNPPTGT SGNGEGEVSD RPPWYKVDKS  480
DYIATPSEVI AAKPSSKKRK NSSSVSGSKG KSLKMGSDDL IQLQVTWEES QGLLRPPAEH  540
PSPSSVVSID GYDFEEFEEA PVIGKPAILA TDKAGWGSAA VAEGGGTDVI LEEGGAMTTK  600
HPRHKPGCSC IVCIQPPSGK GPKHKPVEPR PRGRPRGKSQ LLPRYWPRFT NEELQRISGK  660
TNAVITPLFE KMLSASDAGR VGRLVLPKKC AETYLPPISQ AEGLPLKVHD YTGKEWVFQF  720
RFWPNNNSRM YVLEGVTPCI QSMFLQAGDI VTFSRLDPGG KLVMGFRKAI NVNPPSSEYP  780
AISNAQDSES TNPPAGTSGN GEGEVSDRPP WYKVDKSDYI ATPSEVIAAK PSSKKRKNSS  840
SVSGSKGKSL KMGSDDLIQL QVTWEESQGL LRPPAEHPSP SSVVSIDGYD FEEFEEAPVI  900
GKPAILATDK AGNKFQWTQC EDCSKWRKIP LDALLPFQWT CSRNLWDLEK YIYIGTLRPL  960
MAQIACIPSL VLNCDSNALS FRASCVADQE SSRELLKDLL PPQPLAAPKK LKAAAIPEKD  1020
GGEAAVAAGG GTDVILEEGG AMTTKHPRQK PGCSCIVCIQ PPSGKGPKHK PDCTCTVCEA  1080
VKRRFTTQQI KRNERKEAES KQLKQLPPPP AQQLPETTGG HDDDDDDDAD PLNSGETGNN  1140
SSGSNEASKR MKSASSSPFK GRIDLNIKPE REEEALPALD SVFTKTLHNV EEMSASRPQK  1200
VSSSPTSGSD GPRQPEETTT SPPNDASQLA SKLILDAALQ MKVVSQTYGN DGNNTQQLAT  1260
GDQILVAAGE GKSTESDDSS LAKLTEEALP ASASPQQLLD SNLPNSNKPA TPPNPQSTTS  1320
LDCPTRLTTT Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-623107712126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10011245
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021636723.10.0B3 domain-containing protein Os07g0563300-like isoform X1
TrEMBLA0A2C9U4S20.0A0A2C9U4S2_MANES; Uncharacterized protein
TrEMBLA0A2P2MA160.0A0A2P2MA16_RHIMU; Uncharacterized protein
TrEMBLA0A2P2MA320.0A0A2P2MA32_RHIMU; Uncharacterized protein
STRINGLus100112450.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77383138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-110HSI2-like 1