PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10011215
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 357aa    MW: 38549.7 Da    PI: 8.5868
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10011215genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.42.7e-53191461128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i++vd+yk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++ls+ + 
  Lus10011215  19 LPPGFRFHPTDEELVVHYLKKKAASLPLPV-TIIADVDLYKFDPWELPGKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILSStGA 115
                  79****************************.89***************8888999**************************************99677 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                   +vg+kk Lvfy g+ pkg+kt+W+mheyrl
  Lus10011215 116 GKVGVKKALVFYGGKPPKGVKTNWIMHEYRL 146
                  78***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-6510186IPR003441NAC domain
PROSITE profilePS5100561.47519186IPR003441NAC domain
PfamPF023654.0E-2820146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MESTDSSSAT HHHHHHPNLP PGFRFHPTDE ELVVHYLKKK AASLPLPVTI IADVDLYKFD  60
PWELPGKATF GEQEWYFFSP RDRKYPNGAR PNRAATSGYW KATGTDKPIL SSTGAGKVGV  120
KKALVFYGGK PPKGVKTNWI MHEYRLVNNN YGGNSSTLLK PPVSNSGSKK SSLRLDDWVL  180
CRIYKKNTNS QNRPVDQRDY EHINHHHQDS NSIEAMLAST TATVKPAGSY ASLLEGEENF  240
FDGMLTAANA ASGGGADGSF RMNSCSKRGI VINDYWNSIN GETMSSPGGN KRFHGDLNTG  300
GGGGGGGGME YNGGATNSFV SLMNQSNTAA FQGGGIIGDL GDEDGVVLRQ QFQFGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-741819216171NO APICAL MERISTEM PROTEIN
1ut4_B5e-741819216171NO APICAL MERISTEM PROTEIN
1ut7_A5e-741819216171NO APICAL MERISTEM PROTEIN
1ut7_B5e-741819216171NO APICAL MERISTEM PROTEIN
3swm_A6e-741819219174NAC domain-containing protein 19
3swm_B6e-741819219174NAC domain-containing protein 19
3swm_C6e-741819219174NAC domain-containing protein 19
3swm_D6e-741819219174NAC domain-containing protein 19
3swp_A6e-741819219174NAC domain-containing protein 19
3swp_B6e-741819219174NAC domain-containing protein 19
3swp_C6e-741819219174NAC domain-containing protein 19
3swp_D6e-741819219174NAC domain-containing protein 19
4dul_A5e-741819216171NAC domain-containing protein 19
4dul_B5e-741819216171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:17124321}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10011215
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021598060.11e-133NAC transcription factor 25-like
SwissprotA0SPJ91e-102NAM2_HORVV; NAC transcription factor NAM-2
TrEMBLA0A0M3R8651e-132A0A0M3R865_MANES; NAC transcription factors 83
STRINGLus100112150.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16233498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.13e-98NAC domain containing protein 25
Publications ? help Back to Top
  1. Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J
    A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat.
    Science, 2006. 314(5803): p. 1298-301
    [PMID:17124321]