PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10011103
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family CPP
Protein Properties Length: 608aa    MW: 66562.4 Da    PI: 7.7718
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10011103genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR23.61e-071972211641
          TCR  16 kYCeCfaagkkCseeCkCedCkNkee 41 
                  +YCeCfa+g++C+  C+C++C+N+ +
  Lus10011103 197 EYCECFASGTYCDG-CNCTGCFNNAD 221
                  6*************.********987 PP
2TCR521.4e-16267306140
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  +++kgC+Ckks ClkkYCeCf+a+  Cse+C+C+dCkN e
  Lus10011103 267 RHNKGCHCKKSGCLKKYCECFQANILCSENCRCNDCKNFE 306
                  589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163431.099185307IPR005172CRC domain
PfamPF036381.0E-4197219IPR005172CRC domain
SMARTSM011140.02198222IPR033467Tesmin/TSO1-like CXC domain
SMARTSM011141.1E-18267308IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.6E-12270305IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MEEGEGGEFP PNNAPQSEAQ QPLDAPAKKL ARQLDFTHTT SVALPDHSQS SQQQQPAGGG  60
GGGQXXXGWF SSRLPNRWFP GRLLKPCRIS FQRRRLSLRI CSMNKFFQLC SLRGRRIFIF  120
GVVSIYPGGE SSEVYSKVQY IVGRVSVADY QIHVNLRINM MVDSCKSSLE FLCAFGDVWS  180
LLRATLKSLS GLTTIFEYCE CFASGTYCDG CNCTGCFNNA DNESSRREAI KVTLERNPNA  240
FRPKIASSPH GIQDKREEKG EVIALGRHNK GCHCKKSGCL KKYCECFQAN ILCSENCRCN  300
DCKNFEGSEE RQALFHNDHA NNITYIQQAA NAAITGAIGT SGYTSPPVSR KRKGPESIFN  360
QKGRDGALHR PGHIQQANQI RAPAQCSNPV VRGTMATLTP SKFTYRSLLA DIIQPQDIKE  420
LCSVLVVLSR EAAKTLDEQR SEEEKQLGDQ RKASIASSSD QERLQNKKES DAEKSEGHND  480
CSATDNAGPD SSTSEGVDAP KSEPMSPGTL ALMCDEKDTM FMEAAASSSS GLTDQGGNGN  540
AVLQLPKKVG GLTETYAEQE RVVLAKFRDC LNKLITIGEN IKGKFLSFLF SSEIFCCSCC  600
CCTCCQC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-2519831625132Protein lin-54 homolog
5fd3_B2e-2519831625132Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10011103
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021641416.11e-180protein tesmin/TSO1-like CXC 5 isoform X1
TrEMBLA0A1R3GJI71e-178A0A1R3GJI7_9ROSI; Uncharacterized protein
STRINGLus100111030.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-143Tesmin/TSO1-like CXC domain-containing protein