PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10011020

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

Trihelix

Protein Properties

Length: 361aa MW: 40225.3 Da PI: 9.6257

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10011020	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	52.6	1.2e-16	28	113	1	82
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 +Wt +e+ +Li+a+r+++ + +rg+l++++W++v++ + ++ ++ +qC++k+e+++kry+ +k++ k + s++ +f Lus10011020 28 CWTTEETVELIKAYRDKWFAANRGNLRAADWDAVASSLadspSSSDPPKTVVQCRHKIEKIRKRYRGEKQRCLKFPGRFFSSWDLF 113 8***********************************6666666668899***************998666555555556555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.9E-17	27	119	No hit	No description
PROSITE profile	PS50090	5.993	29	89	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MSSPAASAST ATAAAAADPS SRKVPPPCWT TEETVELIKA YRDKWFAANR GNLRAADWDA 60 VASSLADSPS SSDPPKTVVQ CRHKIEKIRK RYRGEKQRCL KFPGRFFSSW DLFPILDAME 120 IGSIGSKQEQ DDPSPVLVAA ADSAHNGLDP DMDFDPDSSF RARKFSKMSN NNNHNYHSYS 180 NGGYDESLEF TQNSVNVALM PKSYGRSDRK PRRLPQMDDS RDERYRPGKR AVDEWANNNN 240 NNVSSSSRIR VKNPATSSRS FDQFANGNAN AKMNNGGGGV STRDPVAEVV SAIKMLREGF 300 VMVEEMKMNM AMEIEKMRMG MELKHNQIFF FFIFITLTPP PPPPPPPFEL KKATKLGFMF 360 *

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MSSPAASAST ATAAAAADPS SRKVPPPCWT TEETVELIKA YRDKWFAANR GNLRAADWDA  60
VASSLADSPS SSDPPKTVVQ CRHKIEKIRK RYRGEKQRCL KFPGRFFSSW DLFPILDAME  120
IGSIGSKQEQ DDPSPVLVAA ADSAHNGLDP DMDFDPDSSF RARKFSKMSN NNNHNYHSYS  180
NGGYDESLEF TQNSVNVALM PKSYGRSDRK PRRLPQMDDS RDERYRPGKR AVDEWANNNN  240
NNVSSSSRIR VKNPATSSRS FDQFANGNAN AKMNNGGGGV STRDPVAEVV SAIKMLREGF  300
VMVEEMKMNM AMEIEKMRMG MELKHNQIFF FFIFITLTPP PPPPPPPFEL KKATKLGFMF  360
*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10011020

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021605142.1	7e-61	uncharacterized protein LOC110609684
TrEMBL	A0A2C9WCE6	2e-59	A0A2C9WCE6_MANES; Uncharacterized protein
STRING	Lus10011020	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13797	14	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	2e-29	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Lus10011020