PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10010959
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 607aa    MW: 67330 Da    PI: 6.7889
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10010959genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.32e-5561421128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                  lppGfrFhPtdeelv +yLk+k++g+k+el e+i+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nrat+sgyWkatgkd++v+++ 
  Lus10010959   6 LPPGFRFHPTDEELVAYYLKRKINGQKIEL-EIIPEVDLYKCEPWDLPgKsFLPSKDMEWYFFSPRDRKYPNGSRTNRATRSGYWKATGKDRKVMNSs 102
                  79****************************.99***************6435566888**************************************85 PP

          NAM  96 .kgel........vglkktLvfykgrapkgektdWvmheyrl 128
                   +           vg+kktLv+y+grap+g++++Wvmheyrl
  Lus10010959 103 qS--SqphsstivVGTKKTLVYYRGRAPHGSRSNWVMHEYRL 142
                  41..245666677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-614166IPR003441NAC domain
PROSITE profilePS5100560.7376166IPR003441NAC domain
PfamPF023656.9E-307142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MAPVSLPPGF RFHPTDEELV AYYLKRKING QKIELEIIPE VDLYKCEPWD LPGKSFLPSK  60
DMEWYFFSPR DRKYPNGSRT NRATRSGYWK ATGKDRKVMN SSQSSQPHSS TIVVGTKKTL  120
VYYRGRAPHG SRSNWVMHEY RLDDRQCDHP DSGLQEAYAL CRIFKKIAGP TAPKLNVEAY  180
YLSGSNHRNN ERCSSNSVER CSDGGGNAYV DTCFVDNNNV HVDGGGWPDF TPGTSSFIDP  240
YSFSFQSSST AASPFPSCSG LPNYPPSKVD IALECARLQH RFTMPPLEVN YNHHDQQQQG  300
SDLLQEILSV AHASQQLINN NNNNNKQHQY SFQAGLFGSG GCGDDFAADV SDFTFTSSAN  360
REMSIGSSND RSSPWLDHHP SSSRSVEIGG DVDIGGGDHR MVENLRWLGM SNDELINKSF  420
MEEHKIVPMS SISTSATHNQ NDIGFISHER NDDGYGSLGF TDDDHPSTVN ADNVVASSPS  480
FDDVAAAEEE DQKVKVNHGL LVATRQAANT FFHQLVPSQT VQIQLNSCNY FNAIDVVSLF  540
VMVLLLQGKK LQIVAAKDSS SSEISIRRRR RRKVSTVGVV LKKFGIFVTV SLAVCTMLVN  600
RVMVTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A8e-54116615168NAC domain-containing protein 19
3swm_B8e-54116615168NAC domain-containing protein 19
3swm_C8e-54116615168NAC domain-containing protein 19
3swm_D8e-54116615168NAC domain-containing protein 19
3swp_A8e-54116615168NAC domain-containing protein 19
3swp_B8e-54116615168NAC domain-containing protein 19
3swp_C8e-54116615168NAC domain-containing protein 19
3swp_D8e-54116615168NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1566571RRRRRR
2566572RRRRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10010959
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021596205.11e-165NAC domain-containing protein 86-like
RefseqXP_021596213.11e-165NAC domain-containing protein 86-like
TrEMBLA0A0M4FKW21e-164A0A0M4FKW2_MANES; NAC transcription factors 1
STRINGLus100109590.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44213460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-125NAC domain containing protein 28