PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10010871 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C2H2 | ||||||||
Protein Properties | Length: 283aa MW: 31880.4 Da PI: 7.2051 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.6 | 0.0002 | 83 | 105 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Lus10010871 83 YSCTFCRREFRSAQALGGHMNVH 105 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.18E-6 | 80 | 109 | No hit | No description |
PROSITE profile | PS50157 | 11.157 | 83 | 110 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 85 | 105 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MIIIYIEDTI NGATAATVWA PPPPQYWMWN GTNNNKSLQP LAPPPNPSSS SFYEDQYSSW 60 EEQAFAEDAA GPHGGCVWPP RSYSCTFCRR EFRSAQALGG HMNVHRRDRA RLKQSPIHPM 120 EIPIQSSLST SPPPSLSYHF SHNPYKPPPD LPTSNNPNRV STDNNCSEKS FFPSEEEIRI 180 KRKRPPNHQP CRSNQEDEMT SLNLVLRQSS QSTASSEEDE VAMGRAKRRR IDDTTSLSLP 240 FMFHEIRNDN NSNKKISVGG CAREELDLEL RLGSDRPQVK SI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 2e-12 | 78 | 105 | 2 | 29 | superman protein |
2l1o_A | 2e-12 | 78 | 105 | 2 | 29 | Transcriptional regulator SUPERMAN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 226 | 230 | KRRRI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10010871 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10010871 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1776 | 30 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37740.1 | 8e-26 | zinc-finger protein 10 |
Link Out ? help Back to Top | |
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Phytozome | Lus10010871 |