PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10010871
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 283aa    MW: 31880.4 Da    PI: 7.2051
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10010871genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.000283105123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C + F++   L  H+++H
  Lus10010871  83 YSCTFCRREFRSAQALGGHMNVH 105
                  99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.18E-680109No hitNo description
PROSITE profilePS5015711.15783110IPR007087Zinc finger, C2H2
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MIIIYIEDTI NGATAATVWA PPPPQYWMWN GTNNNKSLQP LAPPPNPSSS SFYEDQYSSW  60
EEQAFAEDAA GPHGGCVWPP RSYSCTFCRR EFRSAQALGG HMNVHRRDRA RLKQSPIHPM  120
EIPIQSSLST SPPPSLSYHF SHNPYKPPPD LPTSNNPNRV STDNNCSEKS FFPSEEEIRI  180
KRKRPPNHQP CRSNQEDEMT SLNLVLRQSS QSTASSEEDE VAMGRAKRRR IDDTTSLSLP  240
FMFHEIRNDN NSNKKISVGG CAREELDLEL RLGSDRPQVK SI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-1278105229superman protein
2l1o_A2e-1278105229Transcriptional regulator SUPERMAN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226230KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10010871
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100108710.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.18e-26zinc-finger protein 10