PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10010851 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | WRKY | ||||||||
Protein Properties | Length: 231aa MW: 25658.4 Da PI: 5.7287 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99 | 3e-31 | 55 | 111 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK +k+s++prsYY+Ct ++C++kk+vers++++++++itYeg H h Lus10010851 55 DDGYKWRKYGQKAIKNSPYPRSYYKCTNRRCSAKKQVERSRDEQDTLIITYEGLHLH 111 8******************************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.6E-29 | 49 | 111 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-26 | 49 | 111 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.026 | 49 | 114 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.2E-34 | 54 | 113 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.3E-25 | 55 | 111 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MQYSGATVAA IQDALPLKTW SILNSPSSLL ERGINRINGS KYTMKLKCFE NGMADDGYKW 60 RKYGQKAIKN SPYPRSYYKC TNRRCSAKKQ VERSRDEQDT LIITYEGLHL HFAYPYYFPL 120 NPDDGEDHHP PPPPKRTKTT SPEAELAEAE AEAEQSRFGG EEDGLFEMKA ADSSQGLLED 180 VVLPFVIRYP ATVDNVNSSS RTSSSNLLIS NSCSSTSSSL SWSSSSQDSE * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-19 | 50 | 111 | 13 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 1e-19 | 50 | 111 | 13 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10010851 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007140517.1 | 9e-59 | hypothetical protein PHAVU_008G119400g | ||||
Refseq | XP_028240309.1 | 1e-58 | probable WRKY transcription factor 49 isoform X2 | ||||
TrEMBL | A0A371FUZ6 | 1e-58 | A0A371FUZ6_MUCPR; Putative WRKY transcription factor 49 (Fragment) | ||||
STRING | Lus10010851 | 1e-172 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7118 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43290.1 | 2e-41 | WRKY DNA-binding protein 49 |
Link Out ? help Back to Top | |
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Phytozome | Lus10010851 |