PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10010820
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 279aa    MW: 30203.2 Da    PI: 9.7677
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10010820genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.71e-056688123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C+k F r  nL+ H r H
  Lus10010820 66 FVCEICSKGFQRDQNLQLHRRGH 88
                 89*******************88 PP
2zf-C2H2171.7e-05142164123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC+ C+k +  +s+ k H++t+
  Lus10010820 142 WKCERCTKKYAVQSDWKAHMKTC 164
                  58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.9E-56588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.07E-76588No hitNo description
SMARTSM003550.0366688IPR015880Zinc finger, C2H2-like
PfamPF128740.0156688No hitNo description
PROSITE profilePS5015710.8876688IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM00355210107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.6E-5130163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.07E-7137163No hitNo description
SMARTSM0035591142162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MAEVENSSKV TVSAAAALSG EANSVSSFGN QPTTTTKKKR NLPGMPDPEA EVIALSPVSL  60
LATNRFVCEI CSKGFQRDQN LQLHRRGHNL PWKLKQRSSK ELRKRVYVCP EPSCVHHDPA  120
RALGDLTGIK KHFCRKHGEK KWKCERCTKK YAVQSDWKAH MKTCGTREYK CDCGTLFSRR  180
DSFITHRAFC DALAEESIRS NNAPRTVTNS NPSPTVVASP PPPPHTPSTN VVSPGNSVQS  240
SGLAENNPAA LASPPATTTA GVTNTNFTCT ASPTNVFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-36138199364Zinc finger protein JACKDAW
5b3h_F2e-36138199364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10010820
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021667940.11e-133protein indeterminate-domain 2-like
RefseqXP_028794491.11e-133zinc finger protein GAI-ASSOCIATED FACTOR 1-like isoform X1
RefseqXP_028794492.11e-133zinc finger protein GAI-ASSOCIATED FACTOR 1-like isoform X1
RefseqXP_028794493.11e-133zinc finger protein GAI-ASSOCIATED FACTOR 1-like isoform X1
SwissprotQ9SCQ61e-118IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A1U8JB631e-132A0A1U8JB63_GOSHI; protein indeterminate-domain 2-like
TrEMBLA0A2P5RUL41e-132A0A2P5RUL4_GOSBA; Uncharacterized protein
STRINGLus100108200.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-120indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]