PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10010759
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 317aa    MW: 35666 Da    PI: 9.5198
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10010759genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.42.6e-1329120898
                  -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.....rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ++ l+++ l lp kf++++g++   s t +l  ++g +W+v +        +k+++++l++GW eF + + +  g ++vFk+ g s f   v +f+
  Lus10010759  29 PYILQLNKLKLPLKFVRRYGSE--LSSTAKLCLPNGHEWNVGVEKnmkgdGNKKDEIWLSEGWGEFMEHHSISKGFILVFKYRGYSVF--DVEIFD 120
                  67788999***********966..7889***************7767776555566**************************988888..787776 PP
2B349.38.6e-16210313298
                  EEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS....-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesg....rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                  + vl+++    ++r v+p  fa+eh      g   ++s+t++l+  +g    ++W v+l   k+++r  +  +GW++F ++n+L+egD+++F+l++  
  Lus10010759 210 IIVLSSNQIRCKSRPVIPILFAREHilkggnG--GTTSTTVVLQMGEGaaasKQWIVEL--VKRRRRvNFGPAGWRQFNDDNNLREGDVCLFHLVSPV 303
                  556666666777899*************9543..457889***99999***********..66666636777*********************99888 PP

                  EE..EEEEE- CS
           B3  89 efelvvkvfr 98 
                  +  ++v++f 
  Lus10010759 304 DLVFNVSIFP 313
                  8888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.2E-2019123IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-1819124IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.82922122IPR003340B3 DNA binding domain
CDDcd100172.63E-1522120No hitNo description
SMARTSM010197.3E-1123122IPR003340B3 DNA binding domain
PfamPF023623.8E-1029118IPR003340B3 DNA binding domain
SuperFamilySSF1019361.26E-15202313IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.0E-16202313IPR015300DNA-binding pseudobarrel domain
CDDcd100171.89E-11207313No hitNo description
PROSITE profilePS5086312.365209315IPR003340B3 DNA binding domain
SMARTSM010193.2E-8209315IPR003340B3 DNA binding domain
PfamPF023621.1E-12212313IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MASLHVPKTR SRSSIRKLPH TSFFRIILPY ILQLNKLKLP LKFVRRYGSE LSSTAKLCLP  60
NGHEWNVGVE KNMKGDGNKK DEIWLSEGWG EFMEHHSISK GFILVFKYRG YSVFDVEIFD  120
LTTCSISYPP PPAAESTGFS NIVVISDDED EEDDKFGGGD EMEKTLERLK SSGVVTDHWL  180
KARIRKMHMK SKKGIEDAIV ASNPTYPNFI IVLSSNQIRC KSRPVIPILF AREHILKGGN  240
GGTTSTTVVL QMGEGAAASK QWIVELVKRR RRVNFGPAGW RQFNDDNNLR EGDVCLFHLV  300
SPVDLVFNVS IFPTSH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267272KRRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10010759
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100107590.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-21B3 family protein