PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10010694
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ZF-HD
Protein Properties Length: 320aa    MW: 35945.7 Da    PI: 7.817
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10010694genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1018.5e-3287141358
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                   +rY+eClkNhAas+Gg+a+DGCgEfmps geegt++al+C+AC+CHRnFHR+++ 
  Lus10010694  87 VIRYRECLKNHAASMGGNATDGCGEFMPS-GEEGTIEALTCSACNCHRNFHRKQTI 141
                  689*************************9.999********************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-2388140IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.6E-2988140IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.9E-3189139IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.27890139IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE patternPS000280126149IPR007087Zinc finger, C2H2
SuperFamilySSF466891.33E-18219290IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.1E-28220291IPR009057Homeodomain-like
TIGRFAMsTIGR015655.2E-26231286IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MELTSHHHHH VHEEEEDHMA IPVNSSYAGG GLNHLIHNPH PPLSPSTVTP ATSSAPLSLP  60
NNNNNNGSGS QHHHHINNNS KRRSSSVIRY RECLKNHAAS MGGNATDGCG EFMPSGEEGT  120
IEALTCSACN CHRNFHRKQT ILHHHPHPHN HHHNPLLLQQ VPLHQHHQAP PPLVVPHHHH  180
HHMLMSYNMA AAAAAGSLLP SESDNHNNDA EDHHQHEYHN NNKQQQGMNT KRHRTKFSQE  240
QKEKMLAFAE SVGWKLQKQE ESVVQQFCHE IGVNRRVLKV WMHNNKHTYQ HHHHQNAVVS  300
RPPVLHPSTT TTAPLPASS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-222302881775ZF-HD homeobox family protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10010694
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395776.11e-76zinc-finger homeodomain protein 3
TrEMBLV4KST63e-75V4KST6_EUTSA; Uncharacterized protein
STRINGLus100106940.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.14e-34zinc finger homeodomain 1