PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10010694 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 320aa MW: 35945.7 Da PI: 7.817 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 101 | 8.5e-32 | 87 | 141 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +rY+eClkNhAas+Gg+a+DGCgEfmps geegt++al+C+AC+CHRnFHR+++ Lus10010694 87 VIRYRECLKNHAASMGGNATDGCGEFMPS-GEEGTIEALTCSACNCHRNFHRKQTI 141 689*************************9.999********************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-23 | 88 | 140 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.6E-29 | 88 | 140 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.9E-31 | 89 | 139 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.278 | 90 | 139 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE pattern | PS00028 | 0 | 126 | 149 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF46689 | 1.33E-18 | 219 | 290 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.1E-28 | 220 | 291 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 5.2E-26 | 231 | 286 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MELTSHHHHH VHEEEEDHMA IPVNSSYAGG GLNHLIHNPH PPLSPSTVTP ATSSAPLSLP 60 NNNNNNGSGS QHHHHINNNS KRRSSSVIRY RECLKNHAAS MGGNATDGCG EFMPSGEEGT 120 IEALTCSACN CHRNFHRKQT ILHHHPHPHN HHHNPLLLQQ VPLHQHHQAP PPLVVPHHHH 180 HHMLMSYNMA AAAAAGSLLP SESDNHNNDA EDHHQHEYHN NNKQQQGMNT KRHRTKFSQE 240 QKEKMLAFAE SVGWKLQKQE ESVVQQFCHE IGVNRRVLKV WMHNNKHTYQ HHHHQNAVVS 300 RPPVLHPSTT TTAPLPASS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 4e-22 | 230 | 288 | 17 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10010694 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006395776.1 | 1e-76 | zinc-finger homeodomain protein 3 | ||||
TrEMBL | V4KST6 | 3e-75 | V4KST6_EUTSA; Uncharacterized protein | ||||
STRING | Lus10010694 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 4e-34 | zinc finger homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | Lus10010694 |