PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10010633
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family TALE
Protein Properties Length: 583aa    MW: 65047 Da    PI: 5.7948
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10010633genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.21.8e-103634001954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   n+yp+++e+  LAk++gL+++qV +WF N R +
  Lus10010633 363 FEHflNPYPNESEKNMLAKQTGLSKNQVANWFINARVR 400
                  664459******************************88 PP
2BELL108.83.4e-35225297172
         BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFea.vaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  e+q+lq+kk+kL+s+++eVdkrYkqy++q+q++iss ++ vag g+ak YtslAl++iSr FrcL+dai +qi
  Lus10010633 225 EKQDLQAKKSKLMSMIDEVDKRYKQYYHQMQVLISSMDTvVAGNGAAKAYTSLALQTISRRFRCLRDAIENQI 297
                  6899*********************************97368*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.8E-43159295IPR006563POX domain
PfamPF075265.2E-41166293IPR006563POX domain
PROSITE profilePS5007113.216341404IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-27343414IPR009057Homeodomain-like
SMARTSM003893.8E-10344408IPR001356Homeobox domain
CDDcd000861.70E-13344405No hitNo description
SuperFamilySSF466891.37E-17345411IPR009057Homeodomain-like
PfamPF059205.4E-18361400IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MATYYSSIDN LHTSTSSCET NQLISSSNSA SIHHDQQLLP HYHSDQFGSR NEMVMFIPPI  60
NDHDNAPDHV VDIPNLIQNS DNFNIQGGLS LSLGTQMMET SSSSAAVIVS VPPPSSSYNN  120
NYHQYPVEAE DQDQQLIHIK MEGHRPIPPP QFYQTTSTMG YANVSVLNSN YLKVTHELLD  180
EVVNVKYALT HQVTADDKCS DKEGNNDDAA ESGVDSSASE LSPSEKQDLQ AKKSKLMSMI  240
DEVDKRYKQY YHQMQVLISS MDTVVAGNGA AKAYTSLALQ TISRRFRCLR DAIENQIEVI  300
RKKLGEQQEA LGQGGIPRLR YIEQQLKLER STLHQHLGVM RHSWRPQRGL PENSVSLLRA  360
WLFEHFLNPY PNESEKNMLA KQTGLSKNQV ANWFINARVR LWKPMVEEMY KEECGGGESD  420
GNSNKSSNYN NEAKRGRHHN QLHDPNYDLD ANNSLLVVAD HELQDTAAVP ADQLIHYFHL  480
DQINGHGQLH QYVEDQTQNS SMPPLNLNTA VGDGSLMSAA VQYGGVSAST GLIIPHVSLA  540
LGLQHNETDD GGLVDDDSFH HSRFGNTVHS FHDFVVSKNP CF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A6e-15350408563Homeobox protein Meis2
3k2a_B6e-15350408563Homeobox protein Meis2
4xrs_A5e-15350407158Homeobox protein Meis1
4xrs_B5e-15350407158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:16513846}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10010633
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9FWS91e-109BLH3_ARATH; BEL1-like homeodomain protein 3
TrEMBLB9R8031e-112B9R803_RICCO; Bel1 homeotic protein, putative
STRINGLus100106330.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21463179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75410.21e-105BEL1-like homeodomain 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]