PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10010371 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | NAC | ||||||||
Protein Properties | Length: 144aa MW: 16451.3 Da PI: 7.8685 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 82.7 | 7.6e-26 | 5 | 143 | 1 | 122 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.....vikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknr.atks 80 lp G++F P+d++l+++yL++k +g+ e ike+d+y++eP dLp+ k+++++w+ ++k + + ++++r nr +k Lus10010371 5 LPSGCQFYPSDQQLLCYYLTNKNHGDGagcnqqE---EtngydLIKELDLYDHEPFDLPEhscysfGPKGRKTHWFCYAKIRVS-KEENRGNRsRAKG 98 699********************99997765441...1455548**************95455543223355566666665444.4567888877899 PP NAM 81 gyWkatgkdkevlsk..kgelvglkktLvfykg.rapkgektdWv 122 gyW+ gk +v+++ +++ vg+++ +vfy g + +++++t+W+ Lus10010371 99 GYWRRLGKVSDVVESgwNSAIVGTRTQFVFYLGnSVKSATRTEWI 143 **************9888999**********883567788****7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.45E-24 | 3 | 143 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 28.149 | 5 | 143 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.5E-13 | 6 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MSFDLPSGCQ FYPSDQQLLC YYLTNKNHGD GAGCNQQEET NGYDLIKELD LYDHEPFDLP 60 EHSCYSFGPK GRKTHWFCYA KIRVSKEENR GNRSRAKGGY WRRLGKVSDV VESGWNSAIV 120 GTRTQFVFYL GNSVKSATRT EWI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10010371 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012068313.1 | 4e-61 | NAC domain-containing protein 83 | ||||
TrEMBL | R4N5R6 | 8e-60 | R4N5R6_JATCU; NAC transcription factor 061 | ||||
STRING | Lus10010371 | 1e-105 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13001 | 26 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 6e-16 | NAC domain containing protein 28 |
Link Out ? help Back to Top | |
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Phytozome | Lus10010371 |